Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/c76a44035117e2aa98a4baaf61cc9c/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/c76a44035117e2aa98a4baaf61cc9c/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/576afef5aee0435598f1c27a4e8de7/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/c76a44035117e2aa98a4baaf61cc9c/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/968b60a9ada7c97dec1ce2855d9b3a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/968b60a9ada7c97dec1ce2855d9b3a/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-qtx7idk0 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:23:27,837 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:23:29,103 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:23:29,390 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:23:31,073 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:23:31,180 - cnv_pipe.batch.run_model - INFO - Processing cluster 858 with 198 probes
2026-06-04 17:23:31,931 - cnv_pipe.batch.run_model.cluster858 - INFO - Child process started for cluster 858 with 198 probes
2026-06-04 17:25:07,898 - cnv_pipe.batch.run_model.cluster858 - INFO - Child process finished cluster 858. Wrote cluster_858_samples.csv and cluster_858_params.csv
2026-06-04 17:25:07,900 - cnv_pipe.batch.run_model - INFO - Cluster 858 finished in 96.72 seconds. Status: SUCCESS