[2026-06-04T17:18:58.789327Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:18:58.790372Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:18:58.790381Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:18:58.790386Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:18:58.790390Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXAzCEIt'
[2026-06-04T17:18:58.790394Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:18:58.790399Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:18:58.790403Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:18:58.790407Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] [RunParameters] memMb: 761556
[2026-06-04T17:18:58.790410Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:18:58.790414Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:18:58.790418Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:18:58.790421Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:18:58.790425Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:18:58.791304Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:18:58.791434Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:18:58.797262Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:18:58.797901Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:18:58.798127Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:18:58.798449Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:18:58.798635Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.799155Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.799251Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.799322Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.799438Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.799555Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.800246Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.800486Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.800701Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.801441Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.801773Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.803185Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.803800Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.804061Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:18:58.804506Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.804825Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.805070Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.805144Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.805300Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.805382Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.805578Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.805647Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.805764Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.805831Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.805941Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.806016Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.806369Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.806684Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.806806Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.806873Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.806983Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.807058Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.807208Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.807269Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.807387Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.807451Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.807562Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.807626Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.807783Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.807980Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.808597Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.808665Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.808784Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.808849Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.808964Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.809030Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.809185Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.809307Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.809426Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.809497Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.809724Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.810173Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.810289Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.810351Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.810460Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.810522Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.810632Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.810697Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.810803Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.810868Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.810981Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.811043Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.811156Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.811306Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.811632Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.812189Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.812540Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.813104Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.813677Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.813744Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.813857Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.813924Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.814034Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.814101Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.815826Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.816516Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.816708Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.816786Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.816921Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.816990Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.817107Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.817171Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.817287Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.817350Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.817835Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.818714Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.818925Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.819022Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.819157Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.819225Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.819408Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.819901Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.820618Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.820690Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.820807Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.820876Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.838046Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.838687Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.838934Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.839116Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.840257Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.840592Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.840798Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.841129Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.841655Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.841989Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.842233Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.842933Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.843985Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.844616Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.845493Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.845974Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.846339Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.847300Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:18:58.847641Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.853644Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:18:58.858621Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:18:58.861747Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T17:18:58.862228Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T17:18:58.865082Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:18:58.870401Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T17:18:58.872587Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:18:58.873316Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:18:58.937580Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.938508Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.942765Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:18:59.203654Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.204880Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.208060Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:18:59.570054Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.571168Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.574408Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:18:59.835884Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.837038Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.840290Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T17:18:59.951719Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.952889Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.956841Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:19:00.167908Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.168976Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.169664Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.172465Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T17:19:00.172829Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.175981Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:19:00.387300Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.388397Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.391586Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:19:00.553097Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.554142Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.557946Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T17:19:00.587779Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.587872Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.588733Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.589116Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.592619Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:19:00.594123Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:19:00.654251Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.655367Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.658502Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T17:19:00.687904Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.688879Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.692890Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T17:19:00.753875Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.754928Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.758061Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:19:00.819427Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.819540Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.820515Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.820954Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.825095Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:19:00.854658Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.855775Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.856325Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:19:00.857547Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.857650Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.859897Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.860386Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:19:00.860583Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.864040Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:19:00.864949Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:19:00.893883Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.894847Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.898031Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T17:19:00.927225Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.928210Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.931135Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T17:19:00.992487Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.993482Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.997094Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T17:19:01.509895Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.510935Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.514179Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:19:01.575355Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.576388Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.579518Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:19:01.941854Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.942758Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.946823Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:19:02.008084Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.008179Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.009228Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.010202Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.016421Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T17:19:02.017922Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T17:19:02.045530Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.045636Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.046701Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.047162Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.051211Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T17:19:02.053059Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T17:19:02.313054Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.314241Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.318535Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:19:02.379352Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.380504Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.384239Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:19:02.413455Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.414515Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.418255Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:19:02.479394Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.480522Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.484773Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:19:02.545517Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.546615Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.550474Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:19:02.611686Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.612813Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.616668Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:19:02.677865Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.678908Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.682557Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T17:19:02.743510Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.744499Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.747511Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:19:02.809140Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.810120Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.813063Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T17:19:02.874818Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.875843Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.879139Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T17:19:02.990715Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.991781Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.995099Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:19:03.024361Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.025356Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.028528Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:19:03.090314Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.091319Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.094936Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:19:03.306449Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.307530Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.311086Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T17:19:03.340343Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.341254Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.344487Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:19:03.373622Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.374484Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.377664Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:19:03.406911Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.407757Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.411105Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:19:03.440356Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.441256Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.444678Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:19:03.445489Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.446224Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.449065Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:19:03.510623Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.511563Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.515954Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:19:03.727085Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.727193Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.728139Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.728575Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.732269Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:19:03.733288Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T17:19:03.744944Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.745795Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.748900Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T17:19:03.778084Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.778212Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.779017Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.781228Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.783432Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:19:03.784590Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:19:03.789536Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.790310Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.793227Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T17:19:03.822667Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.823548Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.824432Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.825908Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.830511Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:19:03.831613Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T17:19:03.843015Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.843768Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.846852Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T17:19:03.876069Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.877078Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.877462Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.878591Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.881877Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:19:03.882794Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:19:04.094770Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.095851Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.099778Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:19:04.160731Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.161568Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.165565Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:19:04.226675Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.227533Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.231327Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T17:19:04.543347Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.544193Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.548085Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T17:19:04.552900Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.553583Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.557196Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:19:04.618083Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.618943Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.622946Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T17:19:04.734130Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.734969Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.738649Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:19:04.751693Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.752537Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.755796Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:19:04.784959Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.785125Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.786174Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.786640Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.790810Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:19:04.850933Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.852056Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.855984Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:19:04.917117Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.918145Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.922007Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:19:04.983090Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.984163Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.987828Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:19:05.149545Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.150348Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.153838Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:19:05.215386Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.216199Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.219858Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T17:19:05.281179Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.281944Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.285572Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:19:05.346717Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.347745Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.351689Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T17:19:05.413188Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.414047Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.417726Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:19:05.478572Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.478710Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.479532Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.480010Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.483795Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T17:19:05.484926Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:19:05.512834Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.513525Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.517788Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.518162Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:19:05.550099Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.815075Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.815801Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.819491Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T17:19:05.880736Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.095655Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.096275Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.099982Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T17:19:06.129161Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.129771Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.132809Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:19:06.137578Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.169538Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.334138Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.334750Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.338739Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:19:06.399667Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.133218Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:19:07.165938Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.166036Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.166492Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.166947Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.170543Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:19:07.171594Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:19:07.233573Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.233661Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.233955Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.234124Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.234499Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.235069Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.239917Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:19:07.242194Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:19:07.269667Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:19:07.300053Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.300135Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.300160Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.300399Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.301226Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.304024Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:19:07.304857Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:19:07.333352Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.334636Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.334808Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.337746Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:19:07.366825Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.436836Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:19:17.679306Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:19:17.679306Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] 
[2026-06-04T17:19:17.679306Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:19:17.679385Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] 
[2026-06-04T17:19:17.679393Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:19:17.679400Z] [nf-e0b9da2789d83227c815d3137c507119-c6bb2-z2kbc] [596_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec