[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXIZZ4kT/chr6_138229684-138229952.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXIZZ4kT/chr6_138229684-138229952.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXIZZ4kT/chr6_138229684-138229952.bed.gz.tbi
[2026-06-04T17:19:00.461410Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:19:00.462169Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:19:00.462180Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:19:00.462184Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:19:00.462189Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXIZZ4kT'
[2026-06-04T17:19:00.462193Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:19:00.462198Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:19:00.462203Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:19:00.462220Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] [RunParameters] memMb: 761556
[2026-06-04T17:19:00.462231Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:19:00.462237Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:19:00.462240Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:19:00.462244Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:19:00.462248Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:19:00.462927Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:19:00.463058Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:19:00.468979Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:19:00.469661Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:19:00.469942Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:19:00.470362Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:19:00.470711Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.471718Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.471808Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.472574Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.472743Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.472976Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.473162Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.475139Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.475367Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:19:00.475779Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.476178Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.476394Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.476520Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.476585Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.476700Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.476766Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.476876Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.476944Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.477060Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.477123Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.477305Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.477383Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.477763Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.478049Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.478167Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.478230Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.478350Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.478419Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.478580Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.478656Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.478773Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.478847Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.478973Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.479037Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.479736Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.479846Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.480067Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.480140Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.480261Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.480325Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.480442Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.480504Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.480963Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.481294Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.481408Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.481473Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.481588Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.481720Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.481835Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.481899Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.482005Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.482078Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.482185Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.482248Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.482589Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.483048Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.483166Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.483231Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.483337Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.483403Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.483521Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.483583Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.483692Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.483758Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.483865Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.483948Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.484059Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.484261Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.485016Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.485125Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.485303Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.485435Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.485561Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.485632Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.487249Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.487575Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.488563Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.488642Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.488767Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.488836Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.488954Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.489019Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.489138Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.489201Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.489314Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.489383Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.489605Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.489863Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.490635Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.490750Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.490864Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.490928Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.491037Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.491103Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.491223Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.491283Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.491397Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.491459Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.491568Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.491752Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.492778Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.492852Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.492971Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.493039Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.493149Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.493219Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.493329Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.493393Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.493520Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.493586Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.496893Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.497573Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.497838Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.497908Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.513584Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.514055Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.514307Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.514619Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.515768Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.516009Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.516159Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.516749Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.517137Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.517684Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.518221Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.518714Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.519676Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.520700Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.521041Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.523784Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:19:00.524883Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:19:00.525258Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.526027Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:19:00.526535Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.532266Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:19:00.535677Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0003] Task initiated on local node
[2026-06-04T17:19:00.537070Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:19:00.543937Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0009] Task initiated on local node
[2026-06-04T17:19:00.545115Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0012] Task initiated on local node
[2026-06-04T17:19:00.551567Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0004] Task initiated on local node
[2026-06-04T17:19:00.553076Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0002] Task initiated on local node
[2026-06-04T17:19:00.665566Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.666781Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.671072Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0005] Task initiated on local node
[2026-06-04T17:19:01.484350Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.485760Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.488889Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0010] Task initiated on local node
[2026-06-04T17:19:01.600241Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.601385Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.604477Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0003] Task initiated on local node
[2026-06-04T17:19:01.866104Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.867289Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.870807Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:19:01.932076Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.933297Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.937165Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0007] Task initiated on local node
[2026-06-04T17:19:02.048121Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.048214Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.049336Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.049701Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.053331Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0003] Task initiated on local node
[2026-06-04T17:19:02.054452Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0010] Task initiated on local node
[2026-06-04T17:19:02.114274Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.115626Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.118594Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:19:02.180033Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.181229Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.184703Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0012] Task initiated on local node
[2026-06-04T17:19:02.346047Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.347180Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.351013Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0002] Task initiated on local node
[2026-06-04T17:19:02.411900Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.413095Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.416545Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0006] Task initiated on local node
[2026-06-04T17:19:02.445364Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.446515Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.450664Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:19:02.561106Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.562291Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.565645Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0012] Task initiated on local node
[2026-06-04T17:19:02.578471Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.579542Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.582676Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0002] Task initiated on local node
[2026-06-04T17:19:02.595584Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.596684Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.599633Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:19:02.711294Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.712507Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.715682Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0001] Task initiated on local node
[2026-06-04T17:19:02.827128Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.828302Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.831569Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0007] Task initiated on local node
[2026-06-04T17:19:02.892740Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.893970Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.897698Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:19:02.958507Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.959703Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.962589Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:19:03.023986Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.025122Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.028647Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0009] Task initiated on local node
[2026-06-04T17:19:03.089439Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.091060Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.091420Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.094706Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.095407Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:19:03.098580Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0000] Task initiated on local node
[2026-06-04T17:19:03.510151Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.511440Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.514685Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:19:03.575987Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.577119Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.581105Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0005] Task initiated on local node
[2026-06-04T17:19:03.593415Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.594486Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.597645Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:19:03.626722Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.628258Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.628576Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.631948Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.632726Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:19:03.635338Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0011] Task initiated on local node
[2026-06-04T17:19:03.797109Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.798250Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.801736Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0004] Task initiated on local node
[2026-06-04T17:19:03.862827Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.864003Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.867454Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:19:03.928553Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.928653Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.929667Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.930261Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.933760Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:19:03.934980Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:19:03.962698Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.963761Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.967445Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-06-04T17:19:03.967939Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.968732Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.976139Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:19:04.005093Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.006240Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.009784Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:19:04.070659Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.070762Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.070809Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.071803Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.072296Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.073053Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.077344Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0010] Task initiated on local node
[2026-06-04T17:19:04.079162Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:19:04.080355Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:19:04.140095Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.140170Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.140204Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.141175Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.141740Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.142304Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.146310Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0001] Task initiated on local node
[2026-06-04T17:19:04.148336Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0006] Task initiated on local node
[2026-06-04T17:19:04.149423Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0013] Task initiated on local node
[2026-06-04T17:19:04.207130Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.207241Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.208227Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.208574Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.213364Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:19:04.214709Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0001] Task initiated on local node
[2026-06-04T17:19:04.274849Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.276017Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.279905Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0012] Task initiated on local node
[2026-06-04T17:19:04.340609Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.341644Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.345001Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0003] Task initiated on local node
[2026-06-04T17:19:04.405823Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.406770Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.409768Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:19:04.471156Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.472170Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.475009Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0000] Task initiated on local node
[2026-06-04T17:19:04.536488Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.537464Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.540448Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-06-04T17:19:04.569877Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.570838Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.574178Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0009] Task initiated on local node
[2026-06-04T17:19:04.635556Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.636531Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.639566Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-06-04T17:19:04.668574Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.669943Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.670459Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.672916Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.673460Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:19:04.675972Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:19:04.737436Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.738418Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.741928Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0008] Task initiated on local node
[2026-06-04T17:19:05.355093Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.356170Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.359297Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:19:05.359859Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.360564Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.363300Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:19:05.424773Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.424863Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.425827Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.426399Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.430016Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:19:05.462807Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:19:05.490869Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.490952Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.491832Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.492200Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.496016Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:19:05.497233Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0000] Task initiated on local node
[2026-06-04T17:19:05.556873Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.557759Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.561200Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:19:05.561842Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.562673Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.565660Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0010] Task initiated on local node
[2026-06-04T17:19:05.626865Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.626963Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.627830Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.628194Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.631416Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:19:05.632603Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0011] Task initiated on local node
[2026-06-04T17:19:05.692868Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.692986Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.693813Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.694187Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.697853Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:19:05.698704Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0002] Task initiated on local node
[2026-06-04T17:19:05.758795Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.758913Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.759733Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.760085Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.763564Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:19:05.764815Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:19:05.776453Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.777248Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.780342Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0007] Task initiated on local node
[2026-06-04T17:19:05.841876Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.842762Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.846043Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:19:05.907054Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.907967Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.911400Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:19:06.172933Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.173749Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.177155Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:19:06.206002Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.206752Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.210303Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0011] Task initiated on local node
[2026-06-04T17:19:06.210810Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.211417Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.214118Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:19:06.275516Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.276381Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.279313Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:19:06.340522Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.341705Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.345170Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:19:06.506701Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.507815Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.510860Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0004] Task initiated on local node
[2026-06-04T17:19:07.023208Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.024429Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.027529Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:19:07.056714Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.057842Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.061025Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:19:07.065861Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.066820Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.069597Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:19:07.098999Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.100057Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.102793Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0007] Task initiated on local node
[2026-06-04T17:19:07.116100Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.117031Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.119969Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:19:07.132942Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.133902Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.136585Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0005] Task initiated on local node
[2026-06-04T17:19:07.137701Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.138625Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.141290Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0008] Task initiated on local node
[2026-06-04T17:19:07.202743Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.203763Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.206872Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0001] Task initiated on local node
[2026-06-04T17:19:07.235991Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.237410Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.239576Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.240820Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0000] Task initiated on local node
[2026-06-04T17:19:07.240906Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.243701Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:19:07.305035Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.305152Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.306347Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.306899Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.310319Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0008] Task initiated on local node
[2026-06-04T17:19:07.311570Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:19:07.371444Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.371532Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.371572Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.372314Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.372739Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.373398Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.375907Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:19:07.378921Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:19:07.407294Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:19:07.407762Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.407836Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.408673Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.409187Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.411760Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.412944Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:19:07.414035Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.417069Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0006] Task initiated on local node
[2026-06-04T17:19:07.418349Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:19:07.447440Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.447540Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.448357Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.448869Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.451896Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-06-04T17:19:07.452964Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:19:07.513507Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.513594Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.514202Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.514723Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.517918Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0009] Task initiated on local node
[2026-06-04T17:19:07.519015Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:19:07.548685Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.548771Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.549312Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.549645Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.552847Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0013] Task initiated on local node
[2026-06-04T17:19:07.553745Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0011] Task initiated on local node
[2026-06-04T17:19:07.583729Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.583802Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.599954Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.600491Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.603278Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0004] Task initiated on local node
[2026-06-04T17:19:07.664622Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.728832Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.729368Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.732270Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0005] Task initiated on local node
[2026-06-04T17:19:07.761312Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.026020Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.026599Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.029566Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:19:08.058951Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.424334Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.424998Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.428024Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0006] Task initiated on local node
[2026-06-04T17:19:08.489290Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.603638Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.604229Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.607411Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0008] Task initiated on local node
[2026-06-04T17:19:08.636432Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.644268Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.644735Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.647477Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:19:08.708772Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.709122Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.709286Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.709675Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.710381Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.716351Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:19:08.716632Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:19:08.742755Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.743091Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:19:08.743699Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.744098Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.746453Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:19:08.751647Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.751836Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.754214Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:19:08.783783Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.783859Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.784098Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.786911Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:19:08.848175Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.117406Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:19:19.351109Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:19:19.351109Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] 
[2026-06-04T17:19:19.351109Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:19:19.351243Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] 
[2026-06-04T17:19:19.351253Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:19:19.351262Z] [nf-caa57c33921225c3ab48a6536ccc3af2-c11f8-2rwk2] [591_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec