cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --algo AlignmentStat Sig_18_tissue.sentieon.alignment_summary_metrics --algo InsertSizeMetricAlgo Sig_18_tissue.sentieon.insert_size_metrics --algo QualDistribution Sig_18_tissue.sentieon.quality_distribution_metrics --algo BaseDistributionByCycle Sig_18_tissue.sentieon.base_distribution_by_cycle_metrics --algo MeanQualityByCycle Sig_18_tissue.sentieon.quality_by_cycle_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:162000001, elapsed 0.0s, est remaining 0.6s, peak mem 81MB, user 0.1s, sys 0.6s, output queue size 18
progress 10% @chr2:72000001, elapsed 0.1s, est remaining 0.5s, peak mem 81MB, user 0.2s, sys 1.4s, output queue size 14
progress 15% @chr2:235000001, elapsed 0.1s, est remaining 0.5s, peak mem 81MB, user 0.2s, sys 2.1s, output queue size 4
progress 20% @chr3:154000001, elapsed 0.1s, est remaining 0.5s, peak mem 81MB, user 0.3s, sys 2.8s, output queue size 12
progress 25% @chr4:117000001, elapsed 0.1s, est remaining 0.4s, peak mem 81MB, user 0.4s, sys 3.6s, output queue size 25
progress 30% @chr5:87000001, elapsed 0.2s, est remaining 0.4s, peak mem 81MB, user 0.5s, sys 4.4s, output queue size 1
progress 35% @chr6:65000001, elapsed 0.2s, est remaining 0.4s, peak mem 81MB, user 0.6s, sys 5.0s, output queue size 11
progress 40% @chr7:55000001, elapsed 0.2s, est remaining 0.3s, peak mem 81MB, user 0.7s, sys 5.7s, output queue size 10
progress 45% @chr8:57000001, elapsed 0.2s, est remaining 0.3s, peak mem 81MB, user 0.7s, sys 6.6s, output queue size 14
progress 50% @chr9:75000001, elapsed 0.3s, est remaining 0.3s, peak mem 81MB, user 0.9s, sys 7.2s, output queue size 13
progress 55% @chr10:92000001, elapsed 0.3s, est remaining 0.2s, peak mem 81MB, user 1.0s, sys 7.8s, output queue size 9
progress 60% @chr11:122000001, elapsed 0.3s, est remaining 0.2s, peak mem 81MB, user 1.1s, sys 8.6s, output queue size 3
progress 65% @chr13:16000001, elapsed 0.4s, est remaining 0.2s, peak mem 81MB, user 1.2s, sys 9.2s, output queue size 8
progress 70% @chr14:63000001, elapsed 0.4s, est remaining 0.2s, peak mem 81MB, user 1.4s, sys 9.9s, output queue size 15
progress 75% @chr16:17000001, elapsed 0.4s, est remaining 0.1s, peak mem 81MB, user 1.4s, sys 10.7s, output queue size 9
progress 80% @chr18:1000001, elapsed 0.4s, est remaining 0.1s, peak mem 81MB, user 1.5s, sys 11.5s, output queue size 14
progress 85% @chr20:20000001, elapsed 0.5s, est remaining 0.1s, peak mem 81MB, user 1.5s, sys 12.3s, output queue size 2
progress 90% @chrX:43000001, elapsed 0.5s, est remaining 0.1s, peak mem 99MB, user 2.1s, sys 12.6s, output queue size 114
progress 95% @chrY:40000001, elapsed 0.6s, est remaining 0.0s, peak mem 108MB, user 2.8s, sys 13.0s, output queue size 276
progress 100% @chr21:41000001, elapsed 1.3s, est remaining 0.0s, peak mem 123MB, user 5.9s, sys 13.5s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: AlignmentStat InsertSizeMetricAlgo QualDistribution BaseDistributionByCycle MeanQualityByCycle
license: sentieon:Metrics=31
input file size: 50047058
reads: 1001838
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.283 user 6.870 sys 8.428 real
done: 1 calls 0.000 user 0.000 sys 0.001 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.003 user 0.002 sys 1.357 real
idle: 73 calls 0.022 user 0.028 sys 52.229 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 129130496 mem 6.161 user 13.988 sys 2.398 real