cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --read_filter QualCalFilter,table=HCC1395_BL.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table.post --algo ReadWriter HCC1395_BL.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 0.2s, est remaining 4.5s, peak mem 352MB, user 0.3s, sys 5.5s, output queue size 39
progress 10% @chr2:98000001, elapsed 0.5s, est remaining 4.7s, peak mem 496MB, user 0.7s, sys 13.8s, output queue size 41
progress 15% @chr2:222000001, elapsed 0.8s, est remaining 4.5s, peak mem 592MB, user 1.1s, sys 22.4s, output queue size 13
progress 20% @chr3:147000001, elapsed 1.1s, est remaining 4.3s, peak mem 667MB, user 1.4s, sys 30.8s, output queue size 9
progress 25% @chr4:134000001, elapsed 1.3s, est remaining 4.0s, peak mem 739MB, user 1.8s, sys 38.8s, output queue size 10
progress 30% @chr5:73000001, elapsed 1.6s, est remaining 3.8s, peak mem 769MB, user 2.1s, sys 46.6s, output queue size 20
progress 35% @chr6:60000001, elapsed 1.9s, est remaining 3.5s, peak mem 871MB, user 2.5s, sys 54.7s, output queue size 13
progress 40% @chr7:49000001, elapsed 2.2s, est remaining 3.2s, peak mem 922MB, user 2.9s, sys 62.9s, output queue size 7
progress 45% @chr8:48000001, elapsed 2.4s, est remaining 3.0s, peak mem 1042MB, user 3.3s, sys 71.2s, output queue size 9
progress 50% @chr9:87000001, elapsed 2.7s, est remaining 2.7s, peak mem 1123MB, user 3.7s, sys 79.5s, output queue size 6
progress 55% @chr10:92000001, elapsed 3.0s, est remaining 2.4s, peak mem 1177MB, user 4.1s, sys 87.2s, output queue size 7
progress 60% @chr11:116000001, elapsed 3.3s, est remaining 2.2s, peak mem 1237MB, user 4.4s, sys 95.3s, output queue size 14
progress 65% @chr13:6000001, elapsed 3.5s, est remaining 1.9s, peak mem 1270MB, user 4.7s, sys 103.7s, output queue size 9
progress 70% @chr14:78000001, elapsed 3.8s, est remaining 1.6s, peak mem 1336MB, user 5.0s, sys 111.7s, output queue size 7
progress 75% @chr16:29000001, elapsed 4.1s, est remaining 1.4s, peak mem 1399MB, user 5.4s, sys 119.8s, output queue size 7
progress 80% @chr17:77000001, elapsed 4.4s, est remaining 1.1s, peak mem 1483MB, user 5.8s, sys 127.9s, output queue size 7
progress 85% @chr20:37000001, elapsed 4.6s, est remaining 0.8s, peak mem 1558MB, user 6.2s, sys 136.0s, output queue size 7
progress 90% @chrX:39000001, elapsed 5.0s, est remaining 0.6s, peak mem 2752MB, user 9.8s, sys 139.9s, output queue size 114
progress 95% @chrY:33000001, elapsed 5.3s, est remaining 0.3s, peak mem 2776MB, user 12.6s, sys 144.0s, output queue size 276
progress 100% @chr21:41000001, elapsed 7.2s, est remaining 0.0s, peak mem 2791MB, user 24.0s, sys 149.5s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 51395360
output file size: 71692770
reads: 1001089
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.032 real
ReadQualCal::delayed_init: 1 calls 0.007 user 0.001 sys 0.019 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 1.785 user 18.935 sys 20.665 real
done: 1 calls 0.385 user 0.271 sys 0.659 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.004 user 0.000 sys 7.264 real
fetch: 3219322 calls 0.281 user 18.803 sys 18.451 real
fetch_reads: 3219322 calls 0.371 user 18.064 sys 18.570 real
fetch_ref: 13103 calls 0.072 user 0.047 sys 0.075 real
fetch_vcf: 13103 calls 1.138 user 0.156 sys 1.494 real
idle: 1408 calls 0.665 user 0.336 sys 91.497 real
init: 1 calls 0.011 user 0.001 sys 0.025 real
update: 13298 calls 6.762 user 1.291 sys 8.658 real
write: 3219322 calls 8.217 user 17.896 sys 26.949 real
overall: 2927316992 mem 27.385 user 151.173 sys 9.072 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before HCC1395_BL.table --after HCC1395_BL.table.post HCC1395_BL.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.030 user 0.000 sys 0.026 real
done: 1 calls 0.059 user 0.001 sys 0.056 real
idle: 61 calls 0.003 user 0.000 sys 31.422 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 81838080 mem 0.091 user 0.022 sys 1.058 real