Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/c76a44035117e2aa98a4baaf61cc9c/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/c76a44035117e2aa98a4baaf61cc9c/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/576afef5aee0435598f1c27a4e8de7/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/c76a44035117e2aa98a4baaf61cc9c/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/ae8d02efd1aa16a2fb51aea16c615e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/ae8d02efd1aa16a2fb51aea16c615e/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-d6q4awlk because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:20:38,935 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:20:39,760 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:20:39,927 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:20:40,832 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:20:40,909 - cnv_pipe.batch.run_model - INFO - Processing cluster 7 with 193 probes
2026-06-04 17:20:41,369 - cnv_pipe.batch.run_model.cluster7 - INFO - Child process started for cluster 7 with 193 probes
2026-06-04 17:21:38,106 - cnv_pipe.batch.run_model.cluster7 - INFO - Child process finished cluster 7. Wrote cluster_7_samples.csv and cluster_7_params.csv
2026-06-04 17:21:38,108 - cnv_pipe.batch.run_model - INFO - Cluster 7 finished in 57.20 seconds. Status: SUCCESS