File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/cc9ee892ae169875bf7b2f0e25da17/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-hyc31oos because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:23:18,345 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:23:19,181 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:23:19,351 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:23:20,319 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:23:20,394 - cnv_pipe.batch.run_model - INFO - Processing cluster 832 with 190 probes
2026-06-04 17:23:20,761 - cnv_pipe.batch.run_model.cluster832 - INFO - Child process started for cluster 832 with 190 probes
2026-06-04 17:24:13,954 - cnv_pipe.batch.run_model.cluster832 - INFO - Child process finished cluster 832. Wrote cluster_832_samples.csv and cluster_832_params.csv
2026-06-04 17:24:13,955 - cnv_pipe.batch.run_model - INFO - Cluster 832 finished in 53.56 seconds. Status: SUCCESS