File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/ca413dbeb7a138ea4c0c436b80f580/.command.err
Size
86.1 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr4_22420786-22421189.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXmmazuv/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXmmazuv/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXmmazuv/chr4_22420786-22421189.bed.gz.tbi
[2026-06-04T17:18:54.229176Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:18:54.230025Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:18:54.230037Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:18:54.230041Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:18:54.230045Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXmmazuv'
[2026-06-04T17:18:54.230049Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:18:54.230076Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:18:54.230088Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:18:54.230094Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T17:18:54.230098Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:18:54.230102Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:18:54.230106Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:18:54.230110Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:18:54.230128Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:18:54.230902Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:18:54.231105Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:18:54.237708Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:18:54.238899Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:18:54.239336Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:18:54.239588Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:18:54.239953Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.240489Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.240584Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.240659Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.240779Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.240847Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.240968Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.241081Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.241305Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.241522Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.242364Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.242906Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.243322Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.244527Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.244891Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.245235Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.247357Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.248401Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:18:54.248764Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.249159Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.249844Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.249932Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.250050Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.250138Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.250259Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.250324Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.250441Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.250508Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.250624Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.250730Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.250959Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.251083Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.251607Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.252023Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.252159Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.252224Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.252340Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.252406Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.252520Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.252581Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.252695Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.252759Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.252884Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.252954Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.253509Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.253995Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.254206Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.254369Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.254493Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.254564Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.254675Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.254747Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.254860Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.254922Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.255125Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.255292Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.255797Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.256409Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.256536Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.256687Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.256804Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.256868Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.256984Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.257052Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.257165Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.257232Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.257345Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.257406Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.257923Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.258519Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.258643Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.258710Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.258818Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.258885Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.261121Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.261832Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.261982Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.262053Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.262188Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.262260Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.262377Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.262442Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.262558Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.262626Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.262738Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.262877Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.263389Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.264405Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.264543Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.264609Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.264727Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.264798Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.264908Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.264974Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.265088Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.265151Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.281155Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.281287Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.281367Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.281630Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.281702Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.281879Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.281944Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.282079Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.282171Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.282233Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:18:54.287986Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.289094Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.289608Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.290444Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.291258Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.292235Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.294983Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.296999Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:18:54.297899Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.299200Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.307097Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T17:18:54.309492Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:18:54.312217Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T17:18:54.313211Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:18:54.317765Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T17:18:54.320395Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:18:54.321433Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:18:55.071980Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.073327Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.076994Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T17:18:55.238306Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.238404Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.239802Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.240658Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.244332Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:18:55.245631Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:18:55.307159Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.308245Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.312134Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:18:55.423568Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.424817Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.428852Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:18:55.740725Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.741887Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.746274Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T17:18:56.007883Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.009138Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.012921Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T17:18:56.074084Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.075328Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.079072Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T17:18:56.140248Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.141406Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.144660Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T17:18:56.256354Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.257516Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.260750Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:18:56.321874Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.323377Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.324704Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.326250Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.329344Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:18:56.332544Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:18:56.494052Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.495278Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.499127Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:18:56.560277Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.561401Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.565077Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:18:56.626519Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.626607Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.627692Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.628215Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.633418Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:18:56.635290Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:18:56.693614Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.694776Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.698182Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:18:56.759694Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.760834Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.764795Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:18:56.793586Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.794741Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.798262Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T17:18:56.859275Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.859380Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.860432Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.860861Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.865849Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:18:57.326815Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.327894Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.331004Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T17:18:57.360435Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.361385Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.364838Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T17:18:57.426036Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.427160Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.431874Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:18:57.642581Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.643814Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.647443Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:18:57.709244Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.710384Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.714453Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T17:18:57.775365Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.775486Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.776505Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.776993Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.781404Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T17:18:57.813307Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:18:57.842243Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.842348Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.843385Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.845572Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.846624Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:18:57.848939Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:18:57.878353Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.880116Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.880600Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.884921Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.885733Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T17:18:57.887226Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.888226Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:18:57.888335Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.891438Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:18:57.952719Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.952832Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.953776Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.954216Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.958770Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:18:57.960342Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:18:58.069737Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.070985Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.074609Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:18:58.135711Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.136634Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.140231Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T17:18:58.448721Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T17:18:58.452127Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.452224Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.453112Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.453655Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.457220Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:18:58.458278Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:18:58.518394Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.518487Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.519318Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.519675Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.523086Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:18:58.524681Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:18:58.584325Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.584426Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.585213Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.585854Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.589846Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:18:58.591456Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:18:58.650728Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.651589Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.655285Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:18:58.715947Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.716760Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.719909Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:18:58.781419Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.782256Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.785785Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:18:58.846887Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.846989Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.847756Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.848266Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.851905Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:18:58.853127Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T17:18:58.880941Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.881687Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.885687Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T17:18:58.946744Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.947571Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.951205Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:18:59.112635Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.113518Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.117224Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:18:59.479254Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.480019Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.484309Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:18:59.595139Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.595872Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.599165Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T17:18:59.628179Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.628808Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.632807Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T17:18:59.637140Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.637765Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.640820Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T17:18:59.953015Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.953145Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.953937Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.954375Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.957609Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:18:59.958927Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T17:19:00.020368Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.020453Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.021041Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.021422Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.024571Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:19:00.025435Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:19:00.085865Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.085935Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.086585Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.086970Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.090823Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:19:00.091819Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:19:00.153027Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.153108Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.153140Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.153924Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.154349Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.154847Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.161494Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:19:00.162964Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:19:00.320801Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.321641Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.325047Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T17:19:00.386023Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.386795Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.390727Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T17:19:00.419667Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.420396Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.423543Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:19:00.484784Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.485512Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.489067Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:19:00.550270Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.550366Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.551072Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.551544Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.556202Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T17:19:00.587948Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T17:19:00.616915Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.616994Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.617626Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.618106Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.621828Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:19:00.623449Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:19:00.650615Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.651228Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.653759Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.654512Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.655348Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T17:19:00.657031Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.657682Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.659489Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:19:00.661426Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:19:00.690114Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.690197Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.690748Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.691074Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.694727Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:19:00.695145Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.695735Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.696118Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T17:19:00.698557Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T17:19:00.760212Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.760282Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.760776Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.761272Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.765205Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:19:00.766844Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:19:00.825901Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.825993Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.826029Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.826601Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.827066Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.830551Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:19:00.832054Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:19:00.891447Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.891534Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.005867Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.006468Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.009671Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T17:19:01.012090Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:19:01.014497Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.015033Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.017722Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:19:01.047123Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.047216Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.111373Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.111935Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.115404Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:19:01.176626Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.208624Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.209082Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.212454Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T17:19:01.273902Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.839654Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.840193Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.843735Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T17:19:01.904508Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.904812Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.904959Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.905264Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.905632Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.910355Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:19:01.911760Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:19:01.912789Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:19:01.937883Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.938316Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.938878Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.939140Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.941800Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:19:01.942630Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:19:01.943944Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.975576Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.975641Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.975789Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.978246Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:19:02.007785Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.829273Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:19:13.118881Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:19:13.118881Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] 
[2026-06-04T17:19:13.118881Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:19:13.119013Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] 
[2026-06-04T17:19:13.119023Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:19:13.119033Z] [nf-ffca413dbeb7a138ea4c0c436b80f580-904f1-4ptsp] [613_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec