[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXsmeghP/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXsmeghP/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXsmeghP/chr19_15162349-15162662.bed.gz.tbi
[2026-06-04T17:18:53.066485Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:18:53.067207Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:18:53.067220Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:18:53.067225Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:18:53.067230Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXsmeghP'
[2026-06-04T17:18:53.067234Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:18:53.067239Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:18:53.067242Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:18:53.067246Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T17:18:53.067250Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:18:53.067253Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:18:53.067257Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:18:53.067261Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:18:53.067265Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:18:53.068065Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:18:53.068189Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:18:53.074242Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:18:53.074939Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:18:53.075200Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:18:53.075511Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:18:53.075851Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.076222Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.076312Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.076385Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.076504Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.076570Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.076689Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.076752Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.076868Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.077147Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.077516Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.077653Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.077740Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.078017Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.078383Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.079074Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.080964Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.081410Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:18:53.082014Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.082139Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.082376Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.082447Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.082565Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.082634Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.082747Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.082817Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.083360Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.083575Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.083785Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.083899Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.084013Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.084081Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.084223Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.084287Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.084398Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.084468Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.084688Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.085072Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.085193Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.085261Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.085371Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.085436Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.085568Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.085634Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.086516Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.086884Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.087010Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.087077Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.087256Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.087323Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.087437Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.087505Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.087627Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.087693Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.087810Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.087875Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.088099Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.088220Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.088801Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.088872Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.089048Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.089137Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.089253Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.089317Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.089426Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.089497Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.106073Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.106533Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.107097Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.107288Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.107366Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.107455Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.107525Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.107636Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.107720Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:53.109218Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:18:53.109609Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.110551Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.111072Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.112245Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.113066Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.114423Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.115465Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.116617Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.117819Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.125813Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T17:18:53.131254Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:18:53.135161Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:18:53.140848Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T17:18:53.143809Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T17:18:53.144028Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:18:53.144117Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T17:18:53.144677Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T17:18:53.235550Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.236286Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.243099Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T17:18:53.269629Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.270779Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.276960Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T17:18:54.439349Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.439456Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.440195Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.440744Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.445265Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T17:18:54.446699Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T17:18:54.506130Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.506229Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.507013Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.507433Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.512212Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:18:54.547062Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:18:54.574090Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.574957Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.578797Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T17:18:54.740124Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.741092Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.744581Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T17:18:54.905605Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.906482Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.909774Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T17:18:54.922824Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.923678Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.926536Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T17:18:54.955616Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.956727Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.957173Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.958222Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.962259Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:18:54.963962Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T17:18:55.023098Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.023930Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.027351Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T17:18:55.339541Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.340378Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.343823Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:18:55.655741Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.656596Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.659714Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T17:18:55.720925Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.721785Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.725416Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T17:18:55.836535Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.837384Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.841778Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T17:18:56.153019Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.153877Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.157356Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:18:56.268686Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.269430Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.272452Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T17:18:56.534161Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.534985Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.538670Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:18:56.599683Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.600412Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.603944Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:18:57.015884Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.016707Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.020035Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:18:57.081333Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.082144Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.085124Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T17:18:57.090017Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.090686Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.093771Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T17:18:57.106603Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.107230Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.109979Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:18:57.123036Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.123108Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.123755Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.124155Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.127811Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T17:18:57.129307Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T17:18:57.156901Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.156985Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.157608Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.157941Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.161229Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:18:57.162206Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:18:57.222526Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.223347Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.226710Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T17:18:57.287732Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.288469Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.291412Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T17:18:57.352805Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.353643Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.356835Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T17:18:58.019705Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.020352Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.023375Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T17:18:58.084542Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.085163Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.088874Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T17:18:58.149827Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.150547Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.153831Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T17:18:58.215103Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.215803Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.219321Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T17:18:58.280174Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.280880Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.284530Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:18:58.288963Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.289699Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.292993Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T17:18:58.321682Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.322355Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.325929Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T17:18:58.326384Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.326822Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.329655Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:18:58.342631Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.343299Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.346087Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:18:58.375364Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.375434Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.375457Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.375927Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.376331Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.376587Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.378680Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.379657Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:18:58.381934Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.382472Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T17:18:58.385833Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:18:58.386281Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:18:58.414536Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.414609Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.415044Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.415523Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.419013Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:18:58.419852Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.420341Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.424090Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:18:58.452807Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.453408Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.456827Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T17:18:58.457611Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:18:58.457989Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.458594Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.460552Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.461131Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.462613Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T17:18:58.463911Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T17:18:58.477190Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.477666Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.480978Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:18:58.493468Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.493969Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.497346Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T17:18:58.497902Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.497956Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.529933Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.530013Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.644178Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.644658Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.647610Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T17:18:58.708910Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.923450Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.923933Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.927405Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T17:18:58.988282Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.253033Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.253104Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.253589Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.253969Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.257356Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:18:59.258457Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T17:18:59.318906Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.318993Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.319228Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.319390Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.319911Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.320337Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.325279Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:18:59.326650Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:18:59.328109Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:18:59.352420Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.352873Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.353512Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.354062Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.354313Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.357007Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:18:59.358058Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:18:59.386266Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.386344Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.386555Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.390260Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:18:59.418901Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.692497Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:19:11.955979Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:19:11.955979Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] 
[2026-06-04T17:19:11.955979Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:19:11.956085Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] 
[2026-06-04T17:19:11.956094Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:19:11.956102Z] [nf-b02cfe80fdfacff14a2834c30ac65d54-8ea11-4qcwb] [620_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec