Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/3f99ecf859218d621858edbfff40bf/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/7fb75bb19bef014eecf269a038384b/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/7fb75bb19bef014eecf269a038384b/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/3f99ecf859218d621858edbfff40bf/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T17:18:54.784003Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:18:54.786908Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:18:54.786921Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:18:54.786926Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:18:54.786931Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXpFlQLw'
[2026-06-04T17:18:54.786936Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:18:54.786943Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:18:54.786947Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:18:54.786952Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-04T17:18:54.786957Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:18:54.786962Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:18:54.786977Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:18:54.786982Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:18:54.786987Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:18:54.787350Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:18:54.787446Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:18:54.794513Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:18:54.795061Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:18:54.795247Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:18:54.795437Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:18:54.795667Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.796467Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.796581Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.796674Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.796937Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.797227Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.797311Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.797544Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.797679Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.798154Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.798293Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.798593Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.798701Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.798924Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.800551Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.800877Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:18:54.801266Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.801419Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.801807Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.801890Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.802116Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.802201Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.802340Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.802423Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.802559Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.802636Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.802995Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.803255Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.803397Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.803478Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.803616Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.803704Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.803840Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.803914Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.804049Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.804126Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.804314Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.804760Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.804899Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.804975Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.805111Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.805191Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.805328Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.805406Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.805537Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.805612Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.805773Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.806003Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.806531Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.806612Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.806745Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.806821Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.806954Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.807031Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.807166Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.807241Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.807378Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.807462Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.808114Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.808370Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.808509Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.808587Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.808728Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.808805Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.808936Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.809020Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.809155Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.809230Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.809362Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.809561Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.810226Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.810307Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.810440Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.810518Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.829480Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.829908Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.829979Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.830158Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.831018Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.831252Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.831377Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.831518Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.831787Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.832176Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.832322Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.832616Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.833168Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.833684Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.834001Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.834809Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.835039Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:54.835599Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.836114Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:18:54.841799Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T17:18:54.843050Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T17:18:54.846978Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:18:54.850124Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T17:18:54.850675Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T17:18:54.854835Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T17:18:54.855963Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:18:54.969509Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.970339Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.974443Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T17:18:56.036552Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.037438Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.040223Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:18:56.303056Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T17:18:56.351657Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.351728Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.351767Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.352649Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.352874Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.353091Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.356522Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T17:18:56.357716Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T17:18:56.358677Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T17:18:56.385783Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.386631Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.389506Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T17:18:56.390391Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.391214Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.393767Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T17:18:56.605306Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.606690Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.609049Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T17:18:56.670536Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.671538Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.674121Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T17:18:56.703491Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.704278Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.706815Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T17:18:57.018387Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.019259Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.021840Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T17:18:57.051043Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.051874Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.054866Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T17:18:57.166184Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.167057Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.169459Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T17:18:57.198748Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.199551Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.201904Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:18:57.263338Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.264157Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.266539Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:18:57.295812Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.296513Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.299582Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:18:57.360606Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.361453Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.363849Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T17:18:57.393181Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.394014Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.396087Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.396984Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:18:57.397105Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.399605Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T17:18:57.861573Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.862399Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.865030Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T17:18:57.926395Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.927269Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.929885Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:18:57.991185Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.992006Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.994289Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:18:58.023744Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.024461Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.026706Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T17:18:58.027992Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.028704Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.031023Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T17:18:58.060391Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.060447Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.061172Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.061452Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.064578Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:18:58.065126Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T17:18:58.125710Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.126447Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.128950Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T17:18:58.240392Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.241182Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.243679Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T17:18:58.305027Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.305778Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.308445Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:18:58.369611Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.370292Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.373168Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T17:18:58.402110Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.402772Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.405572Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T17:18:58.566725Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.566794Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.566825Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.567513Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.567797Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.568118Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.571434Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T17:18:58.573128Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:18:58.574273Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T17:18:58.601684Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.601771Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.602830Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.603412Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.604547Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.605799Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:18:58.607310Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.607646Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T17:18:58.609691Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T17:18:58.639000Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.639049Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.639625Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.639867Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.642230Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:18:58.643194Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T17:18:58.671591Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.672149Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.674312Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T17:18:58.886126Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.886837Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.889422Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:18:58.902434Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.903003Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.906120Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T17:18:58.918968Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.919553Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.921862Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T17:18:58.951170Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.951700Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.953816Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:18:59.015337Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.015941Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.018430Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T17:18:59.330225Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.330922Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.333402Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:18:59.394732Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.395341Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.397445Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:18:59.459137Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.459776Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.462235Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T17:18:59.467269Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.467778Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.470519Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:18:59.499450Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.499970Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.502319Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T17:18:59.531616Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.531683Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.532219Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.532488Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.535524Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:18:59.536368Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T17:18:59.564491Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.564577Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.565408Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.565756Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.568777Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:18:59.569736Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:18:59.629862Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.630454Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.633008Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:18:59.633927Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.634390Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.636782Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:18:59.666084Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.666134Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.666600Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.666815Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.669510Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:18:59.670451Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T17:18:59.698896Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.700411Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.700834Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.703249Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T17:18:59.764669Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.828605Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.828664Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.829121Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.829383Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.832577Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T17:18:59.833333Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T17:18:59.861465Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.861521Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.075592Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.076087Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.078379Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T17:19:00.107720Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.472088Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.472553Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.474747Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T17:19:00.504208Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.718154Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.718553Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.720934Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T17:19:00.750156Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.813857Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.814182Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.816026Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T17:19:00.845754Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.845989Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.846085Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.846306Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.846548Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.850408Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:19:00.850624Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:19:00.851275Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:19:00.878840Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.878896Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.878923Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.879133Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.879417Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.882486Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:19:00.883265Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:19:00.911446Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.911491Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.911684Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.913665Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:19:00.943265Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.412763Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:19:13.674647Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:19:13.674647Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] 
[2026-06-04T17:19:13.674647Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:19:13.674719Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] 
[2026-06-04T17:19:13.674730Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:19:13.674739Z] [nf-773f99ecf859218d621858edbfff40bf-15b16-4rncg] [751_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec