Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/b796174aadd0426fae47c0c62b8257/germline_control_1.haplotyper.split.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/6209ea3cdd5ebd8597dc0d2600b5ab/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/6209ea3cdd5ebd8597dc0d2600b5ab/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/53bb42052633634a7a34b57b0866ec/germline_control_1.mpileup.gz
==> STAGING COMPLETE (4 inputs)

Parsing mpileup: germline_control_1.mpileup.gz
Found 18 positions with indel observations
Annotating VCF: germline_control_1.haplotyper.split.vcf.gz
[E::idx_find_and_load] Could not retrieve index file for 'germline_control_1.haplotyper.split.vcf.gz'
Output written to: germline_control_1.entropy.vcf