cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_tumor --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_1.tnseq.vcf.gz --contamination positive_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_1.tnseq.segments --orientation_priors positive_somatic_control_1.tnseq.orientation_data.tsv positive_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:78000001, elapsed 0.1s, est remaining 1.9s, peak mem 813MB, user 0.1s, sys 3.5s, output queue size 158
progress 10% @chr3:32000001, elapsed 0.2s, est remaining 1.8s, peak mem 813MB, user 0.2s, sys 11.1s, output queue size 320
progress 15% @chr3:159000001, elapsed 0.3s, est remaining 1.7s, peak mem 813MB, user 0.3s, sys 20.5s, output queue size 482
progress 20% @chr4:164000001, elapsed 0.4s, est remaining 1.5s, peak mem 813MB, user 0.5s, sys 29.4s, output queue size 643
progress 25% @chr5:35000001, elapsed 0.5s, est remaining 1.4s, peak mem 813MB, user 0.6s, sys 39.7s, output queue size 804
progress 30% @chr6:95000001, elapsed 0.6s, est remaining 1.3s, peak mem 813MB, user 0.7s, sys 50.5s, output queue size 966
progress 35% @chr7:93000001, elapsed 0.6s, est remaining 1.2s, peak mem 813MB, user 0.8s, sys 60.8s, output queue size 1126
progress 40% @chr9:25000001, elapsed 0.7s, est remaining 1.1s, peak mem 813MB, user 1.0s, sys 71.1s, output queue size 1288
progress 45% @chr10:8000001, elapsed 0.8s, est remaining 1.0s, peak mem 813MB, user 1.2s, sys 80.4s, output queue size 1450
progress 50% @chr9:98000001, elapsed 0.9s, est remaining 0.9s, peak mem 813MB, user 1.3s, sys 90.9s, output queue size 1612
progress 55% @chr12:133000001, elapsed 1.0s, est remaining 0.8s, peak mem 813MB, user 1.5s, sys 101.5s, output queue size 1773
progress 60% @chr10:132000001, elapsed 1.1s, est remaining 0.7s, peak mem 813MB, user 1.7s, sys 111.4s, output queue size 1935
progress 65% @chr15:49000001, elapsed 1.2s, est remaining 0.6s, peak mem 813MB, user 1.9s, sys 122.4s, output queue size 2097
progress 70% @chr17:25000001, elapsed 1.2s, est remaining 0.5s, peak mem 813MB, user 2.1s, sys 132.6s, output queue size 2259
progress 75% @chr19:15000001, elapsed 1.3s, est remaining 0.4s, peak mem 813MB, user 2.3s, sys 142.2s, output queue size 2420
progress 80% @chr22:18000001, elapsed 1.4s, est remaining 0.3s, peak mem 813MB, user 2.5s, sys 151.5s, output queue size 2582
progress 85% @chrX:110000001, elapsed 1.4s, est remaining 0.2s, peak mem 813MB, user 2.7s, sys 159.2s, output queue size 2756
progress 90% @chr22_GL383582v2_alt:1, elapsed 1.5s, est remaining 0.2s, peak mem 813MB, user 3.1s, sys 168.3s, output queue size 3185
progress 95% @chr5:15000001, elapsed 1.5s, est remaining 0.1s, peak mem 813MB, user 3.3s, sys 184.1s, output queue size 4375
progress 100% @HLA-C*03:02:02:02:1, elapsed 1.6s, est remaining 0.0s, peak mem 813MB, user 3.6s, sys 196.2s, output queue size 6394
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 50711
output file size: 43806
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.000 user 0.000 sys 0.010 real
"predict_filter": 171 calls 0.010 user 0.026 sys 0.022 real
advance: 3219322 calls 0.281 user 89.725 sys 105.791 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.004 user 0.004 sys 1.740 real
fetch_ref: 448 calls 0.000 user 0.041 sys 0.047 real
idle: 20634 calls 0.801 user 0.419 sys 1076.304 real
init: 1 calls 0.330 user 0.119 sys 1.676 real
overall: 852627456 mem 4.882 user 202.336 sys 4.667 real