cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr14_64122012-64122133.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr14_64122012-64122133.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr14:100880712, elapsed 0.2s, est remaining 2.9s, peak mem 75MB, user 0.0s, sys 0.1s, output queue size 612
progress 10% @chr15:40899144, elapsed 0.2s, est remaining 1.9s, peak mem 75MB, user 0.0s, sys 0.2s, output queue size 2849
progress 15% @chr15:61954421, elapsed 0.3s, est remaining 1.6s, peak mem 81MB, user 0.1s, sys 0.4s, output queue size 5479
progress 20% @chr15:87966131, elapsed 0.4s, est remaining 1.5s, peak mem 96MB, user 0.1s, sys 0.5s, output queue size 7761
progress 25% @chr16:1950844, elapsed 0.4s, est remaining 1.2s, peak mem 99MB, user 0.1s, sys 0.5s, output queue size 9446
progress 30% @chr16:23525127, elapsed 0.5s, est remaining 1.1s, peak mem 108MB, user 0.2s, sys 0.6s, output queue size 11929
progress 35% @chr16:66566514, elapsed 0.5s, est remaining 1.0s, peak mem 120MB, user 0.2s, sys 0.8s, output queue size 1451
progress 40% @chr16:89286670, elapsed 0.6s, est remaining 0.8s, peak mem 126MB, user 0.3s, sys 0.9s, output queue size 3922
progress 45% @chr17:10309234, elapsed 0.6s, est remaining 0.7s, peak mem 132MB, user 0.3s, sys 1.0s, output queue size 6537
progress 50% @chr17:36329856, elapsed 0.6s, est remaining 0.6s, peak mem 147MB, user 0.3s, sys 1.3s, output queue size 9135
progress 55% @chr17:45114250, elapsed 0.7s, est remaining 0.6s, peak mem 156MB, user 0.3s, sys 1.4s, output queue size 11377
progress 60% @chr17:68428829, elapsed 0.7s, est remaining 0.5s, peak mem 165MB, user 0.4s, sys 1.6s, output queue size 13912
progress 65% @chr18:5433903, elapsed 0.8s, est remaining 0.4s, peak mem 186MB, user 0.4s, sys 1.8s, output queue size 16627
progress 70% @chr18:62550348, elapsed 0.8s, est remaining 0.3s, peak mem 189MB, user 0.4s, sys 2.0s, output queue size 19003
progress 75% @chr19:6926366, elapsed 0.8s, est remaining 0.3s, peak mem 201MB, user 0.5s, sys 2.2s, output queue size 21396
progress 80% @chr19:15254152, elapsed 0.9s, est remaining 0.2s, peak mem 204MB, user 0.5s, sys 2.3s, output queue size 23651
progress 85% @chr19:36891492, elapsed 0.9s, est remaining 0.2s, peak mem 207MB, user 0.5s, sys 2.4s, output queue size 25965
progress 90% @chr19:46469733, elapsed 1.0s, est remaining 0.1s, peak mem 228MB, user 0.5s, sys 2.5s, output queue size 28135
progress 95% @chr20:36904118, elapsed 1.0s, est remaining 0.1s, peak mem 234MB, user 0.6s, sys 2.7s, output queue size 30777
progress 100% @chr20:64273221, elapsed 1.0s, est remaining 0.0s, peak mem 240MB, user 0.6s, sys 2.9s, output queue size 33213
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586812
output file size: 22310
reads: 1001133
contig: 48152 intervals 9000028 bases
active: 97912 calls 0.000 user 0.001 sys 0.016 real
advance: 49760 calls 0.001 user 0.003 sys 0.022 real
calc: 97912 calls 0.000 user 0.012 sys 0.016 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.006 user 0.001 sys 2.575 real
fetch: 97912 calls 0.000 user 0.000 sys 0.016 real
fetch_ref: 97912 calls 0.093 user 0.056 sys 0.356 real
idle: 51 calls 0.003 user 0.027 sys 30.818 real
init: 1 calls 0.049 user 0.001 sys 0.042 real
region: 97912 calls 0.000 user 0.000 sys 0.018 real
tracker: 97912 calls 0.032 user 0.009 sys 0.085 real
overall: 251822080 mem 1.156 user 4.583 sys 3.695 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory