cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --read_filter QualCalFilter,table=Sig_18_Blood.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table.post --algo ReadWriter Sig_18_Blood.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:163000001, elapsed 0.3s, est remaining 6.3s, peak mem 292MB, user 0.5s, sys 8.8s, output queue size 1
progress 10% @chr2:76000001, elapsed 0.6s, est remaining 5.4s, peak mem 502MB, user 1.0s, sys 16.5s, output queue size 41
progress 15% @chr2:240000001, elapsed 0.9s, est remaining 4.9s, peak mem 598MB, user 1.4s, sys 24.2s, output queue size 10
progress 20% @chr3:159000001, elapsed 1.1s, est remaining 4.5s, peak mem 739MB, user 1.9s, sys 31.9s, output queue size 9
progress 25% @chr4:119000001, elapsed 1.4s, est remaining 4.2s, peak mem 826MB, user 2.3s, sys 39.6s, output queue size 4
progress 30% @chr5:90000001, elapsed 1.6s, est remaining 3.8s, peak mem 886MB, user 2.8s, sys 47.3s, output queue size 11
progress 35% @chr6:67000001, elapsed 1.9s, est remaining 3.5s, peak mem 943MB, user 3.1s, sys 55.2s, output queue size 11
progress 40% @chr7:59000001, elapsed 2.2s, est remaining 3.3s, peak mem 997MB, user 3.4s, sys 63.2s, output queue size 6
progress 45% @chr8:50000001, elapsed 2.5s, est remaining 3.0s, peak mem 1075MB, user 3.9s, sys 71.2s, output queue size 7
progress 50% @chr9:78000001, elapsed 2.7s, est remaining 2.7s, peak mem 1156MB, user 4.2s, sys 79.3s, output queue size 11
progress 55% @chr10:102000001, elapsed 3.0s, est remaining 2.5s, peak mem 1204MB, user 4.5s, sys 87.2s, output queue size 3
progress 60% @chr11:132000001, elapsed 3.3s, est remaining 2.2s, peak mem 1267MB, user 4.9s, sys 95.2s, output queue size 16
progress 65% @chr13:25000001, elapsed 3.5s, est remaining 1.9s, peak mem 1315MB, user 5.2s, sys 103.0s, output queue size 20
progress 70% @chr14:74000001, elapsed 3.8s, est remaining 1.6s, peak mem 1366MB, user 5.5s, sys 110.9s, output queue size 15
progress 75% @chr16:22000001, elapsed 4.1s, est remaining 1.4s, peak mem 1423MB, user 5.8s, sys 118.8s, output queue size 11
progress 80% @chr18:8000001, elapsed 4.3s, est remaining 1.1s, peak mem 1450MB, user 6.0s, sys 126.7s, output queue size 13
progress 85% @chr20:26000001, elapsed 4.6s, est remaining 0.8s, peak mem 1489MB, user 6.3s, sys 134.6s, output queue size 9
progress 90% @chrX:36000001, elapsed 5.1s, est remaining 0.6s, peak mem 2764MB, user 10.8s, sys 139.4s, output queue size 114
progress 95% @chrY:44000001, elapsed 5.4s, est remaining 0.3s, peak mem 2785MB, user 14.6s, sys 143.5s, output queue size 276
progress 100% @chr21:41000001, elapsed 7.5s, est remaining 0.0s, peak mem 2794MB, user 26.7s, sys 149.6s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 52290609
output file size: 74586812
reads: 1001133
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.004 user 0.026 sys 0.045 real
ReadQualCal::delayed_init: 1 calls 0.008 user 0.001 sys 0.025 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 1.974 user 20.068 sys 21.031 real
done: 1 calls 0.419 user 0.222 sys 0.647 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.000 user 0.002 sys 7.609 real
fetch: 3219322 calls 0.251 user 18.877 sys 14.671 real
fetch_reads: 3219322 calls 0.398 user 19.097 sys 14.990 real
fetch_ref: 13318 calls 0.039 user 0.059 sys 0.085 real
fetch_vcf: 13318 calls 1.277 user 0.122 sys 1.569 real
idle: 1480 calls 0.881 user 0.304 sys 84.123 real
init: 1 calls 0.008 user 0.009 sys 0.032 real
update: 13537 calls 7.319 user 2.213 sys 10.408 real
write: 3219322 calls 10.149 user 19.368 sys 29.380 real
overall: 2930688000 mem 30.132 user 151.211 sys 8.960 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_Blood.table --after Sig_18_Blood.table.post Sig_18_Blood.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.020 user 0.000 sys 0.027 real
done: 1 calls 0.040 user 0.020 sys 0.058 real
idle: 61 calls 0.002 user 0.000 sys 31.324 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 81944576 mem 0.079 user 0.033 sys 1.047 real