cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr14_64122012-64122133.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr14_64122012-64122133.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr14:100880712, elapsed 0.1s, est remaining 1.0s, peak mem 69MB, user 0.0s, sys 0.2s, output queue size 2161
progress 10% @chr15:40899144, elapsed 0.1s, est remaining 0.9s, peak mem 69MB, user 0.1s, sys 0.4s, output queue size 4403
progress 15% @chr15:63908520, elapsed 0.2s, est remaining 1.0s, peak mem 78MB, user 0.1s, sys 0.7s, output queue size 2115
progress 20% @chr15:87989891, elapsed 0.2s, est remaining 0.9s, peak mem 81MB, user 0.1s, sys 0.9s, output queue size 4403
progress 25% @chr16:1950844, elapsed 0.3s, est remaining 0.8s, peak mem 81MB, user 0.1s, sys 1.1s, output queue size 6090
progress 30% @chr16:23482923, elapsed 0.4s, est remaining 0.8s, peak mem 90MB, user 0.2s, sys 1.5s, output queue size 8567
progress 35% @chr16:66536964, elapsed 0.4s, est remaining 0.8s, peak mem 99MB, user 0.2s, sys 1.8s, output queue size 11171
progress 40% @chr16:89279067, elapsed 0.5s, est remaining 0.8s, peak mem 111MB, user 0.3s, sys 2.2s, output queue size 13645
progress 45% @chr17:10198208, elapsed 0.6s, est remaining 0.7s, peak mem 123MB, user 0.3s, sys 2.6s, output queue size 16260
progress 50% @chr17:36332290, elapsed 0.7s, est remaining 0.7s, peak mem 129MB, user 0.4s, sys 3.1s, output queue size 18863
progress 55% @chr17:45102951, elapsed 0.7s, est remaining 0.6s, peak mem 138MB, user 0.4s, sys 3.4s, output queue size 21099
progress 60% @chr17:68434556, elapsed 0.8s, est remaining 0.5s, peak mem 141MB, user 0.5s, sys 3.9s, output queue size 23637
progress 65% @chr18:5433903, elapsed 0.9s, est remaining 0.5s, peak mem 150MB, user 0.5s, sys 4.3s, output queue size 26351
progress 70% @chr18:62550348, elapsed 1.0s, est remaining 0.4s, peak mem 165MB, user 0.5s, sys 4.6s, output queue size 28727
progress 75% @chr19:6919548, elapsed 1.0s, est remaining 0.3s, peak mem 171MB, user 0.6s, sys 5.0s, output queue size 31117
progress 80% @chr19:15264404, elapsed 1.1s, est remaining 0.3s, peak mem 174MB, user 0.6s, sys 5.3s, output queue size 33371
progress 85% @chr19:36949512, elapsed 1.2s, est remaining 0.2s, peak mem 183MB, user 0.6s, sys 5.6s, output queue size 35692
progress 90% @chr19:46621280, elapsed 1.4s, est remaining 0.2s, peak mem 189MB, user 0.6s, sys 5.8s, output queue size 37868
progress 95% @chr20:36916678, elapsed 1.6s, est remaining 0.1s, peak mem 189MB, user 0.7s, sys 6.1s, output queue size 40498
progress 100% @chr20:64236555, elapsed 1.8s, est remaining 0.0s, peak mem 189MB, user 0.7s, sys 6.3s, output queue size 42937
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692770
output file size: 22307
reads: 1001089
contig: 48152 intervals 9000028 bases
active: 97912 calls 0.000 user 0.000 sys 0.018 real
advance: 49760 calls 0.000 user 0.033 sys 0.024 real
calc: 97912 calls 0.005 user 0.007 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.010 user 0.000 sys 3.336 real
fetch: 97912 calls 0.000 user 0.000 sys 0.019 real
fetch_ref: 97912 calls 0.123 user 0.074 sys 0.396 real
idle: 51 calls 0.002 user 0.004 sys 31.231 real
init: 1 calls 0.034 user 0.007 sys 0.046 real
region: 97912 calls 0.000 user 0.003 sys 0.020 real
tracker: 97912 calls 0.062 user 0.006 sys 0.092 real
overall: 201482240 mem 1.292 user 9.314 sys 4.476 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory