Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/e032914e04bf78e0491dde9edcbebc/.command.sh
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/e032914e04bf78e0491dde9edcbebc/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/a990a08c35878a9f8edbfb86b22de5/Sig_18_Blood.recalibrated.bam.bai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/a990a08c35878a9f8edbfb86b22de5/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)
Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:
/var/tmp/strelka/runWorkflow.py
[2026-06-04T17:18:58.330503Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:18:58.331128Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:18:58.331142Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:18:58.331146Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:18:58.331151Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXdmbfAj'
[2026-06-04T17:18:58.331155Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:18:58.331160Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:18:58.331164Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:18:58.331168Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T17:18:58.331172Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:18:58.331176Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:18:58.331179Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:18:58.331183Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:18:58.331187Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:18:58.331799Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:18:58.331916Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:18:58.337634Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:18:58.338544Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:18:58.338733Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:18:58.338988Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:18:58.339191Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.340378Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.340531Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.340843Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.341228Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.341862Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.342054Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.343701Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.344396Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.344725Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:18:58.344817Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.345032Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.345268Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.345335Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.345445Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.345512Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.345623Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.345686Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.345799Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.345860Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.346035Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.346121Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.346290Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.346514Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.347000Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.347258Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.347396Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.347492Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.347622Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.347696Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.347809Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.347886Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.347998Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.348058Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.348167Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.348230Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.348432Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.348786Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.348897Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.348959Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.349075Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.349136Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.349245Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.349310Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.349420Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.349481Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.349625Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.349762Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.349874Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.349941Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.350049Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.350113Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.350220Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.350297Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.350712Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.351184Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.366402Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.366509Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.366582Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.366734Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.366805Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.366888Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.366955Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.367065Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.367131Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.367184Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:18:58.375511Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.376156Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.376394Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.376731Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.377337Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.378040Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.378834Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.381527Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.382609Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.386588Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T17:18:58.390176Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:18:58.391454Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T17:18:58.395090Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T17:18:58.397625Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T17:18:58.399223Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T17:18:58.400842Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T17:18:58.401887Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:18:58.499943Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.500021Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.500688Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.501000Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.505033Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T17:18:58.506017Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T17:18:59.368602Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.369336Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.373450Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T17:18:59.377227Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.377735Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.380515Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:18:59.542153Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.542941Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.546797Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T17:18:59.658107Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.658855Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.662099Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T17:18:59.723504Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.724256Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.726714Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T17:18:59.788493Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.789204Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.792026Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:18:59.853583Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.854198Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.857139Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T17:18:59.918367Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.919102Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.922165Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T17:19:00.134102Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.134839Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.138011Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T17:19:00.349763Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.350470Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.353186Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T17:19:00.414680Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.415385Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.418354Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T17:19:00.479881Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.480587Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.483371Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T17:19:00.496424Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.497064Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.499691Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T17:19:00.529440Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.529531Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.530150Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.530423Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.533827Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T17:19:00.845441Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.846131Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.848917Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T17:19:00.878294Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.878967Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.881891Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T17:19:00.911191Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.911858Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.914559Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T17:19:00.943943Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.944580Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.947257Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T17:19:00.952326Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.952866Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.955627Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T17:19:00.984859Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.985462Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.988177Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T17:19:01.049988Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.050623Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.054042Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T17:19:01.466221Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.466839Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.470225Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:19:01.499048Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.499707Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.502409Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T17:19:01.531670Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.532262Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.534719Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T17:19:01.564302Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.564874Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.567384Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T17:19:01.596749Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.596830Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.597404Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.597812Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.600790Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T17:19:01.601405Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T17:19:01.629974Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.630061Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.630534Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.630810Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.634054Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:19:01.634683Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T17:19:01.695348Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.695906Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.699032Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:19:01.728260Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.728811Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.731268Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T17:19:01.760892Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.761397Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.764252Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T17:19:01.794871Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.795375Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.798035Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:19:01.827316Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.827824Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.830518Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T17:19:01.859828Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.860307Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.862930Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T17:19:01.974843Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.975373Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.978353Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T17:19:02.007670Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.008173Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.010892Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:19:02.040114Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.154397Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.154877Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.157497Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T17:19:02.187388Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.251490Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.251959Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.254732Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:19:02.316185Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.430597Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.431023Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.433445Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T17:19:02.462992Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.033117Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T17:19:03.078604Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.078679Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.079077Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.079330Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.081828Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T17:19:03.082765Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T17:19:03.111473Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.111549Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.326036Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.326460Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.328711Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T17:19:03.358667Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.673205Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.673592Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.676540Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T17:19:03.737726Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.737946Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.738071Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.738709Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.739021Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.742098Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:19:03.743425Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:19:03.744438Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:19:03.771904Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.771967Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.771987Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.772174Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.772850Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.775424Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:19:03.776351Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:19:03.805794Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.805867Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.806051Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.808383Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:19:03.837977Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.002426Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:19:08.879086Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:19:08.879086Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner]
[2026-06-04T17:19:08.879086Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] workflow version: 2.9.10
[2026-06-04T17:19:08.879163Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner]
[2026-06-04T17:19:08.879171Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:19:08.879177Z] [nf-02e032914e04bf78e0491dde9edcbebc-bb50d-rv7jv] [586_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec