cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18630847, elapsed 0.0s, est remaining 0.8s, peak mem 84MB, user 0.0s, sys 0.1s, output queue size 2311
progress 10% @chr1:37761367, elapsed 0.1s, est remaining 0.8s, peak mem 96MB, user 0.1s, sys 0.2s, output queue size 4961
progress 15% @chr1:65401761, elapsed 0.1s, est remaining 0.7s, peak mem 108MB, user 0.1s, sys 0.4s, output queue size 1124
progress 20% @chr1:113837590, elapsed 0.2s, est remaining 0.7s, peak mem 117MB, user 0.1s, sys 0.6s, output queue size 3883
progress 25% @chr1:155239616, elapsed 0.2s, est remaining 0.6s, peak mem 127MB, user 0.2s, sys 0.7s, output queue size 6225
progress 30% @chr1:179102287, elapsed 0.2s, est remaining 0.6s, peak mem 136MB, user 0.3s, sys 0.9s, output queue size 8700
progress 35% @chr1:209796348, elapsed 0.3s, est remaining 0.5s, peak mem 147MB, user 0.3s, sys 1.0s, output queue size 11127
progress 40% @chr1:246986967, elapsed 0.3s, est remaining 0.5s, peak mem 157MB, user 0.4s, sys 1.2s, output queue size 13534
progress 45% @chr2:32543241, elapsed 0.4s, est remaining 0.4s, peak mem 166MB, user 0.4s, sys 1.3s, output queue size 15825
progress 50% @chr2:74457334, elapsed 0.4s, est remaining 0.4s, peak mem 180MB, user 0.4s, sys 1.5s, output queue size 18312
progress 55% @chr2:113499257, elapsed 0.4s, est remaining 0.4s, peak mem 189MB, user 0.5s, sys 1.7s, output queue size 20839
progress 60% @chr2:171006474, elapsed 0.5s, est remaining 0.3s, peak mem 202MB, user 0.5s, sys 1.9s, output queue size 23540
progress 65% @chr2:202814702, elapsed 0.5s, est remaining 0.3s, peak mem 211MB, user 0.5s, sys 2.1s, output queue size 25814
progress 70% @chr2:233772261, elapsed 0.6s, est remaining 0.2s, peak mem 217MB, user 0.6s, sys 2.2s, output queue size 28287
progress 75% @chr3:12369537, elapsed 0.6s, est remaining 0.2s, peak mem 231MB, user 0.6s, sys 2.4s, output queue size 30535
progress 80% @chr3:49804181, elapsed 0.6s, est remaining 0.2s, peak mem 240MB, user 0.7s, sys 2.5s, output queue size 32989
progress 85% @chr3:102456193, elapsed 0.7s, est remaining 0.1s, peak mem 249MB, user 0.8s, sys 2.7s, output queue size 35623
progress 90% @chr3:139561010, elapsed 0.7s, est remaining 0.1s, peak mem 261MB, user 0.8s, sys 2.9s, output queue size 38216
progress 95% @chr3:189880064, elapsed 0.8s, est remaining 0.0s, peak mem 274MB, user 0.8s, sys 3.1s, output queue size 40668
progress 100% @chr4:30721423, elapsed 0.8s, est remaining 0.0s, peak mem 283MB, user 0.9s, sys 3.3s, output queue size 42862
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586812
output file size: 22307
reads: 1001133
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.009 user 0.001 sys 0.016 real
advance: 51084 calls 0.001 user 0.005 sys 0.020 real
calc: 100735 calls 0.000 user 0.012 sys 0.016 real
done: 1 calls 0.001 user 0.000 sys 0.002 real
execute: 1 calls 0.004 user 0.001 sys 1.425 real
fetch: 100735 calls 0.000 user 0.017 sys 0.016 real
fetch_ref: 100735 calls 0.149 user 0.038 sys 0.352 real
idle: 39 calls 0.008 user 0.064 sys 19.820 real
init: 1 calls 0.030 user 0.010 sys 0.042 real
region: 100735 calls 0.002 user 0.003 sys 0.018 real
tracker: 100735 calls 0.021 user 0.003 sys 0.087 real
overall: 299094016 mem 1.349 user 5.107 sys 2.549 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory