File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/7d7bb674ec732b810b25364e311f33/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-b_lmk8id because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:23:52,445 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:23:53,303 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:23:53,468 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:23:54,481 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:23:54,549 - cnv_pipe.batch.run_model - INFO - Processing cluster 1001 with 186 probes
2026-06-04 17:23:54,929 - cnv_pipe.batch.run_model.cluster1001 - INFO - Child process started for cluster 1001 with 186 probes
2026-06-04 17:24:48,858 - cnv_pipe.batch.run_model.cluster1001 - INFO - Child process finished cluster 1001. Wrote cluster_1001_samples.csv and cluster_1001_params.csv
2026-06-04 17:24:48,860 - cnv_pipe.batch.run_model - INFO - Cluster 1001 finished in 54.31 seconds. Status: SUCCESS