Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/007ebcce901c87b84e196c8bcec86a/germline_control_2.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/c08dcd26693c48d4d7de03c762778b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/c08dcd26693c48d4d7de03c762778b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/b86bdee0641d8875646bed76ada9fe/germline_control_2.dv_rescue.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/b86bdee0641d8875646bed76ada9fe/germline_control_2.dv_rescue.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/007ebcce901c87b84e196c8bcec86a/germline_control_2.haplotyper.unfiltered.vcf.gz.tbi
==> STAGING COMPLETE (6 inputs)

INFO: Loading Sentieon variant positions...
INFO:   394 variant positions in Sentieon VCF
INFO: Scanning DeepVariant VCF for novel INDEL positions...
INFO:   0 PASS INDELs in DeepVariant VCF
INFO:   0 novel positions (not in Sentieon) -> written to germline_control_2.dv_only_sites.vcf.gz