.command.log - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:PREP_TNSEQ_SNV (positive_somatic_control_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/4922cae5f6239c41e270fe7d69e0d0/.command.log
Size: 663 bytes
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:PREP_TNSEQ_SNV (positive_somatic_control_1)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/4922cae5f6239c41e270fe7d69e0d0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/4922cae5f6239c41e270fe7d69e0d0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/98d8637b022ed1162d76c1910d96c4/positive_somatic_control_1.tnseq.filtered.vcf.gz
==> STAGING COMPLETE (4 inputs)

Lines   total/split/joined/realigned/mismatch_removed/dup_removed/skipped:	171/19/0/37/0/0/0