[2026-06-04T19:43:19.700906Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:19.701794Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:19.701829Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:19.701834Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:19.701840Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXdef2zY'
[2026-06-04T19:43:19.701845Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:19.701855Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:19.701863Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:19.701867Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:43:19.701871Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:19.701876Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:19.701880Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:19.701884Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:19.701890Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:19.702393Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:19.702514Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:19.709844Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:19.710657Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:19.710915Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:19.711131Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:19.711370Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.712056Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.712151Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.712226Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.712367Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.712439Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.712665Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.713017Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.713143Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.713526Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.713892Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.716473Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.716780Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:19.717012Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.717317Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.717395Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.717519Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.717593Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.717717Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.717819Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.718035Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.718169Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.718295Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.718375Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.718772Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.718990Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.719429Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.719501Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.719618Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.719691Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.719808Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.719878Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.719989Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.720092Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.720368Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.720610Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.721021Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.721497Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.721690Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.721765Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.721895Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.721965Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.722085Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.722152Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.722265Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.722331Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.722760Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.723190Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.723317Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.723383Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.723496Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.723564Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.723677Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.723740Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.723856Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.723919Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.724038Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.724176Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.724770Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.725172Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.725558Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.725991Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.726561Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.726631Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.742393Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.742735Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.742813Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.742993Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.743070Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.743155Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.743225Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.743338Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.743409Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:19.743466Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:19.747781Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.748418Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.750240Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.750534Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.751030Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.751827Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.752802Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.753765Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.754713Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.759105Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T19:43:19.761624Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T19:43:19.765070Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T19:43:19.767387Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T19:43:19.769109Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T19:43:19.770111Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T19:43:19.772673Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T19:43:19.872238Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.872403Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.873586Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.874080Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.878157Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T19:43:19.878965Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T19:43:19.939131Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.940080Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.943812Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T19:43:20.054939Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.055805Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.059850Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T19:43:20.121022Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.121918Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.125536Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T19:43:20.186429Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.187376Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.190886Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T19:43:20.252116Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.253003Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.256401Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T19:43:20.317555Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.318415Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.322029Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T19:43:20.444349Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T19:43:20.483352Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.484474Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.487291Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T19:43:20.549004Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.549782Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.552720Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T19:43:20.714378Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.715656Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.719162Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T19:43:20.780411Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.781966Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.785463Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T19:43:20.846655Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.848019Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.851410Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T19:43:20.880619Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.881991Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.884858Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.885690Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.886017Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T19:43:20.888627Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T19:43:20.950239Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.951099Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.954645Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T19:43:21.015727Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.015824Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.015865Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.016633Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.017213Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.017691Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.021951Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T19:43:21.023524Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T19:43:21.024656Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T19:43:21.052346Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.053105Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.056493Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T19:43:21.061204Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.061865Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.065015Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T19:43:21.226525Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.227359Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.230592Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T19:43:21.291840Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.292657Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.295763Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T19:43:21.357108Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.357215Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.357938Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.358238Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.361878Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T19:43:21.362493Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T19:43:21.423237Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.423352Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.424197Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.424586Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.428197Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T19:43:21.428603Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T19:43:21.489079Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.489191Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.489879Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.490142Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.494347Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T19:43:21.495221Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T19:43:21.555291Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.556030Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.559742Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T19:43:21.564289Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.564995Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.567701Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T19:43:21.597180Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.597930Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.601191Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T19:43:21.662539Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.663828Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.667197Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T19:43:21.728561Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.729583Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.732630Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T19:43:21.794122Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.794829Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.797760Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T19:43:21.859343Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.860178Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.863597Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T19:43:21.864324Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.864778Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.867683Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T19:43:21.929160Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.929824Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.933504Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T19:43:21.994563Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.995342Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.998460Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T19:43:22.060007Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.060675Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.064053Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T19:43:22.124859Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.125421Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.128569Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T19:43:22.741603Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.742632Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.746169Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T19:43:22.807253Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.807355Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.808103Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.808539Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.811902Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T19:43:22.813017Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T19:43:22.872982Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.873101Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.873908Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.874401Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.878214Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T19:43:22.879713Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T19:43:22.938987Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.939671Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.942676Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T19:43:23.004089Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.004950Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.008346Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T19:43:23.008869Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.009495Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.012395Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T19:43:23.073643Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.073742Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.288388Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.288851Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.291631Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T19:43:23.353188Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.467898Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.467988Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.468466Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.468920Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.471971Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T19:43:23.472820Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T19:43:23.533600Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.533695Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.698117Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.698734Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.701649Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T19:43:23.730653Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.844821Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.845427Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.848482Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T19:43:23.909476Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.675465Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.675855Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.678670Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T19:43:24.707697Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.707989Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.708150Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.708469Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.708952Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.713206Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:24.741062Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:24.752703Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:24.773670Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.773755Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.773784Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.774131Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.774700Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.777688Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:24.804536Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:24.806816Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.806879Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.807113Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.809519Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:24.839023Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.353798Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:30.238132Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:30.238132Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] 
[2026-06-04T19:43:30.238132Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:30.238202Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] 
[2026-06-04T19:43:30.238210Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:30.238217Z] [nf-b5d97e10d7b2a3628423fabeb743a114-f0cee-9jfm6] [573_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec