cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr8_93795409-93795507.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr8_93795409-93795507.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr8:144248877, elapsed 0.0s, est remaining 0.7s, peak mem 79MB, user 0.0s, sys 0.1s, output queue size 2399
progress 10% @chr9:36933769, elapsed 0.1s, est remaining 0.7s, peak mem 94MB, user 0.1s, sys 0.2s, output queue size 2112
progress 15% @chr9:96758778, elapsed 0.1s, est remaining 0.6s, peak mem 94MB, user 0.1s, sys 0.3s, output queue size 3893
progress 20% @chr9:128940369, elapsed 0.2s, est remaining 0.6s, peak mem 106MB, user 0.1s, sys 0.4s, output queue size 6510
progress 25% @chr10:14908408, elapsed 0.2s, est remaining 0.6s, peak mem 118MB, user 0.1s, sys 0.6s, output queue size 9264
progress 30% @chr10:69200280, elapsed 0.2s, est remaining 0.6s, peak mem 124MB, user 0.1s, sys 0.7s, output queue size 11651
progress 35% @chr10:100498029, elapsed 0.3s, est remaining 0.5s, peak mem 138MB, user 0.2s, sys 1.0s, output queue size 14307
progress 40% @chr11:299305, elapsed 0.3s, est remaining 0.5s, peak mem 145MB, user 0.2s, sys 1.2s, output queue size 16888
progress 45% @chr11:17788085, elapsed 0.4s, est remaining 0.4s, peak mem 157MB, user 0.2s, sys 1.4s, output queue size 19044
progress 50% @chr11:61416105, elapsed 0.4s, est remaining 0.4s, peak mem 166MB, user 0.2s, sys 1.5s, output queue size 21408
progress 55% @chr11:72988964, elapsed 0.4s, est remaining 0.4s, peak mem 178MB, user 0.3s, sys 1.7s, output queue size 24079
progress 60% @chr11:114444541, elapsed 0.5s, est remaining 0.3s, peak mem 187MB, user 0.3s, sys 1.9s, output queue size 26371
progress 65% @chr12:6462034, elapsed 0.5s, est remaining 0.3s, peak mem 196MB, user 0.3s, sys 2.1s, output queue size 28729
progress 70% @chr12:31672304, elapsed 0.6s, est remaining 0.2s, peak mem 204MB, user 0.4s, sys 2.2s, output queue size 30822
progress 75% @chr12:56002222, elapsed 0.6s, est remaining 0.2s, peak mem 217MB, user 0.4s, sys 2.4s, output queue size 33306
progress 80% @chr12:100057571, elapsed 0.7s, est remaining 0.2s, peak mem 228MB, user 0.4s, sys 2.6s, output queue size 36031
progress 85% @chr12:123783107, elapsed 0.7s, est remaining 0.1s, peak mem 238MB, user 0.5s, sys 2.7s, output queue size 38886
progress 90% @chr13:48456200, elapsed 0.8s, est remaining 0.1s, peak mem 250MB, user 0.5s, sys 2.9s, output queue size 41250
progress 95% @chr14:22633768, elapsed 0.8s, est remaining 0.0s, peak mem 256MB, user 0.5s, sys 3.0s, output queue size 43508
progress 100% @chr14:56621531, elapsed 0.8s, est remaining 0.0s, peak mem 268MB, user 0.6s, sys 3.2s, output queue size 46060
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586806
output file size: 22310
reads: 1001133
contig: 48642 intervals 9000010 bases
"assemble": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_addRead": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_buildGraph": 2 calls 0.000 user 0.000 sys 0.000 real
"assemble_computecigar": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_calcsize": 2 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_clear": 3 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_prepare": 4 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_threading": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_op1": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_op2": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_op3": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_sg_clean": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_sg_create": 1 calls 0.000 user 0.000 sys 0.000 real
"checkGraph": 1 calls 0.000 user 0.000 sys 0.000 real
"findHaplotype": 1 calls 0.000 user 0.000 sys 0.000 real
active: 98785 calls 0.000 user 0.005 sys 0.019 real
advance: 50143 calls 0.001 user 0.003 sys 0.021 real
assemble_region: 1 calls 0.000 user 0.000 sys 0.000 real
calc: 98785 calls 0.007 user 0.000 sys 0.018 real
clip_region: 1 calls 0.000 user 0.000 sys 0.000 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.002 user 0.001 sys 1.527 real
fetch: 98785 calls 0.000 user 0.002 sys 0.019 real
fetch_ref: 98786 calls 0.060 user 0.047 sys 0.387 real
fetch_region: 1 calls 0.000 user 0.000 sys 0.000 real
idle: 39 calls 0.004 user 0.016 sys 20.665 real
init: 1 calls 0.019 user 0.020 sys 0.043 real
region: 98785 calls 0.010 user 0.001 sys 0.022 real
tracker: 98785 calls 0.014 user 0.009 sys 0.091 real
trim_region: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 284954624 mem 1.219 user 5.299 sys 2.649 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory