File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/febfcc48d3a2699016db84828e20e6/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr1_68991-70108.bed)
Attempt

Content

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[2026-06-04T19:43:15.584589Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:15.595063Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:15.595099Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:15.595106Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:15.595111Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX2rRqLe'
[2026-06-04T19:43:15.595116Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:15.595122Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:15.595125Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:15.595130Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:43:15.595133Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:15.595137Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:15.595141Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:15.595144Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:15.595149Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:15.595753Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:15.595856Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:15.601686Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:15.602457Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:15.602621Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:15.602833Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:15.603039Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.603725Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.603966Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.604083Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.604498Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.604871Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.605914Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.606424Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.606711Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:15.606944Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.607257Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.607368Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.607481Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.607545Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.607656Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.607719Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.607862Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.607932Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.608047Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.608109Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.608281Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.608366Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.608582Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.608860Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.608971Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.609034Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.609150Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.609213Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.609322Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.609388Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.609499Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.609566Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.609685Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.609747Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.609854Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.609941Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.610348Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.610565Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.610680Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.610742Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.610853Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.610916Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.611030Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.611092Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.611549Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.611640Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.612009Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.612449Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.612581Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.612653Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.612760Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.612823Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.612935Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.612997Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.613110Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.613173Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.613283Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.613349Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.613458Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.613632Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.614092Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.614153Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.614266Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.614328Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.614436Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.614519Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.614629Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.614694Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.629336Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.629635Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.629706Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.629863Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.629936Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.630025Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.631206Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.631649Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.632197Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:15.632250Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:15.641318Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.641891Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.642271Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.642801Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.644219Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.644560Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T19:43:15.645019Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.645587Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.647560Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.648262Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T19:43:15.649083Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.653720Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T19:43:15.656278Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T19:43:15.658131Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T19:43:15.659985Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T19:43:15.660475Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T19:43:15.763935Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.764739Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.767692Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T19:43:16.329849Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.330688Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.333495Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T19:43:16.595636Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.596720Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.599968Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T19:43:16.660853Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.661722Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.664437Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T19:43:16.693671Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.694588Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.697445Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T19:43:17.310354Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.311244Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.314116Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T19:43:17.375503Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.376473Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.379492Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T19:43:17.408552Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.409397Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.412437Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T19:43:17.808454Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T19:43:17.824490Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.824580Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.825558Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.825798Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.829340Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T19:43:17.830026Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T19:43:17.890754Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.891567Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.894434Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T19:43:17.955855Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.956746Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.959766Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T19:43:17.988924Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.989672Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.992965Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T19:43:18.054091Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.055084Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.058378Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T19:43:18.119132Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.120092Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.123333Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T19:43:18.184659Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.185477Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.188958Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T19:43:18.250201Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.251056Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.254101Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T19:43:18.315288Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.316141Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.319432Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T19:43:18.380911Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.381679Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.384624Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T19:43:18.397832Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.398509Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.401378Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T19:43:18.462725Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.463549Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.466783Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T19:43:18.628344Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.629099Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.631718Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T19:43:18.693340Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.694128Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.696801Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T19:43:18.758279Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.759053Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.762147Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T19:43:18.923789Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.924642Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.927380Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T19:43:18.989131Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.989898Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.993050Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T19:43:19.022025Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.022831Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.025650Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T19:43:19.086977Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.087714Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.090765Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T19:43:19.152002Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.152834Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.156095Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T19:43:19.468478Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.469265Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.472934Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T19:43:19.734776Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.735462Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.738732Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T19:43:20.050659Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.051537Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.055068Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T19:43:20.116487Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.117360Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.121254Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T19:43:20.182081Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.182891Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.186655Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T19:43:20.297852Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.298695Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.301886Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T19:43:20.363124Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.363847Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.366781Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T19:43:20.428256Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.428984Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.432381Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T19:43:20.461548Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.462437Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.465829Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T19:43:20.466482Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.466945Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.469872Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T19:43:20.531211Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.531945Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.534988Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T19:43:20.596640Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.597460Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.601410Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T19:43:21.214099Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.215108Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.218636Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T19:43:21.247705Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.248457Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.251684Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T19:43:21.312904Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.313004Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.313042Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.313654Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.314004Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.314373Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.317934Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T19:43:21.319499Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T19:43:21.320596Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T19:43:21.379172Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.379298Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.379940Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.380253Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.383460Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T19:43:21.384504Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T19:43:21.397691Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.398325Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.401387Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T19:43:21.414506Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.415081Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.417961Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T19:43:21.431016Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.431627Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.434328Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T19:43:21.463669Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.464564Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.467703Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T19:43:21.468320Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.468980Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.471902Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T19:43:21.500851Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.504510Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.220823Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.221455Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.224133Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T19:43:22.285713Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.285842Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.286442Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.290850Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T19:43:22.351227Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.766608Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.767108Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.770084Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T19:43:22.831416Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.996175Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.996802Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.999829Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T19:43:23.061193Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.276066Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.276619Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.279322Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T19:43:23.340849Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.405078Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.405654Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.408477Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T19:43:23.470002Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.470293Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.470468Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.470756Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.471109Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.474785Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:23.476165Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:23.477126Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:23.504762Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.504836Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.505115Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.505424Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.508301Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:23.509186Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:23.513209Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.577099Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.577194Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.577456Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.579972Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:23.609573Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.179949Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:34.484055Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:34.484055Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] 
[2026-06-04T19:43:34.484055Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:34.484115Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] 
[2026-06-04T19:43:34.484122Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:34.484129Z] [nf-77febfcc48d3a2699016db84828e20e6-ba709-dxv74] [577_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec