File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/b331574430d9d56b2aedc3733547d8/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-06-04T19:43:33.691114Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:33.691817Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:33.691858Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:33.691866Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:33.691872Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX8wHUMY'
[2026-06-04T19:43:33.691878Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:33.691885Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:33.691890Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:33.691895Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:43:33.691902Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:33.691907Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:33.691913Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:33.691918Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:33.691924Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:33.692664Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:33.692761Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:33.698595Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:33.699253Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:33.699465Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:33.699662Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:33.699881Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.700708Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.700796Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.700866Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.701187Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.701567Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.701652Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.702071Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.702465Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.704553Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.704876Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.705128Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:33.705573Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.705814Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.706029Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.706097Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.706213Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.706279Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.706393Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.706455Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.706630Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.706699Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.706815Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.706881Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.706995Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.707115Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.707624Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.707901Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.708013Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.708082Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.708189Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.708284Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.708392Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.708452Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.708560Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.708622Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.708735Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.708817Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.708979Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.709046Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.709203Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.709380Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.709970Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.710136Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.710588Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.710654Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.710771Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.710891Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.711009Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.711076Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.711189Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.711303Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.711436Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.711503Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.711680Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.712152Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.712267Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.712343Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.712449Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.712514Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.712623Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.712686Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.712798Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.712861Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.712984Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.713053Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.713169Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.713245Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.713519Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.714056Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.714172Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.714235Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.714341Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.714403Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.731537Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.732020Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.732225Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.732418Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.733686Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.734326Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.734436Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.734845Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.735060Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.735337Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.735752Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.736009Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.736427Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.737090Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:33.737358Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.738583Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.739382Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.740890Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.743321Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T19:43:33.743971Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.748877Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T19:43:33.749749Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T19:43:33.753897Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T19:43:33.757087Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T19:43:33.759943Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T19:43:33.761020Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T19:43:33.824956Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.826349Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.826953Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.828309Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.832766Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T19:43:33.834289Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T19:43:34.846006Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.847472Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.850545Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T19:43:34.911675Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.911792Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.913197Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.913850Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.917097Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T19:43:34.918322Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T19:43:34.978268Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.978405Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.979505Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.980016Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.983660Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T19:43:34.984422Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T19:43:35.295311Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.296407Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.299357Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T19:43:35.410720Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.410859Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.412198Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.412577Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.415504Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T19:43:35.416292Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T19:43:35.477035Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.477142Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.478201Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.478615Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.481883Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T19:43:35.509574Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T19:43:35.511350Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.511459Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.512491Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.512779Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.515679Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T19:43:35.516128Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T19:43:35.577166Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.577307Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.578333Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.578834Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.582368Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T19:43:35.583150Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T19:43:35.643852Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.644887Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.648008Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T19:43:35.859512Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.860695Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.863751Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T19:43:35.893002Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.894059Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.897020Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T19:43:36.058480Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.059707Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.062739Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T19:43:36.147435Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T19:43:36.174068Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.174156Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.174855Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.175181Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.178066Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T19:43:36.179042Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T19:43:36.239401Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.240414Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.243438Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T19:43:36.304709Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.305535Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.308167Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T19:43:36.369605Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.370411Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.373175Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T19:43:36.402343Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.403073Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.405931Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T19:43:36.467280Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.468305Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.471592Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T19:43:36.783661Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.783762Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.784687Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.785201Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.787984Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T19:43:36.789144Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T19:43:36.849471Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.849558Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.850388Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.850771Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.853894Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T19:43:36.854987Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T19:43:36.866854Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.867707Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.870393Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T19:43:36.899916Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.900807Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.903513Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T19:43:37.716441Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.717579Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.720531Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T19:43:37.749608Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.750521Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.753368Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T19:43:37.782466Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.783321Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.786375Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T19:43:37.847572Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.848476Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.851045Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T19:43:37.864335Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.865277Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.868009Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T19:43:37.881363Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.881461Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.882229Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.882529Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.885683Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T19:43:37.886800Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T19:43:37.898737Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.899540Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.902071Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T19:43:37.963635Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.964633Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.967548Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T19:43:38.028883Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.029872Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.033247Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T19:43:38.037757Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.038554Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.040973Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T19:43:38.070542Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.071811Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.072118Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.073091Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.075746Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T19:43:38.076848Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T19:43:38.105275Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.106111Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.109022Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T19:43:38.138075Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.139073Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.141832Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T19:43:38.171117Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.171987Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.175137Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T19:43:38.204134Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.204920Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.207516Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T19:43:38.236892Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.237648Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.240188Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T19:43:38.269641Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.270394Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.273277Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T19:43:38.286263Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.287007Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.289605Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T19:43:38.302908Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.303630Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.306273Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T19:43:38.335541Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.335641Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.336349Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.336815Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.340142Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T19:43:38.340748Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T19:43:38.401532Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.402258Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.405053Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T19:43:38.434221Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.434339Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.435019Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.435590Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.438192Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T19:43:38.439171Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T19:43:38.467533Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.467635Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.732150Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.732234Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.732662Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.733004Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.735747Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T19:43:38.736401Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T19:43:38.765561Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.765629Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.331258Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.331788Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.334577Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T19:43:39.363774Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.578319Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.578788Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.581312Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T19:43:39.642871Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.857218Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.857676Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.860301Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T19:43:39.889500Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.103922Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.104380Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.106627Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T19:43:40.136087Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.136342Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.136466Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.136745Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.137163Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.140844Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:40.142007Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:40.142965Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:40.169358Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.169412Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.169432Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.169619Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.170118Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.172427Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:40.173057Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:40.202515Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.202573Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.202732Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.204977Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:40.235692Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:44.307506Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:52.580630Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:52.580630Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] 
[2026-06-04T19:43:52.580630Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:52.580700Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] 
[2026-06-04T19:43:52.580715Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:52.580723Z] [nf-f1b331574430d9d56b2aedc3733547d8-fd2ab-trwlw] [560_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec