File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/57704b48e63513cb84b1f14e86b2d9/.command.err
Size
3.6 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed Sig_18_Blood_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:165000001, elapsed 0.1s, est remaining 1.1s, peak mem 102MB, user 0.1s, sys 1.3s, output queue size 8
progress 10% @chr2:75000001, elapsed 0.1s, est remaining 1.0s, peak mem 102MB, user 0.2s, sys 2.8s, output queue size 5
progress 15% @chr2:227000001, elapsed 0.2s, est remaining 0.9s, peak mem 102MB, user 0.3s, sys 4.4s, output queue size 11
progress 20% @chr3:150000001, elapsed 0.2s, est remaining 0.9s, peak mem 102MB, user 0.4s, sys 5.8s, output queue size 10
progress 25% @chr4:105000001, elapsed 0.3s, est remaining 0.8s, peak mem 102MB, user 0.5s, sys 7.3s, output queue size 12
progress 30% @chr5:67000001, elapsed 0.3s, est remaining 0.7s, peak mem 102MB, user 0.6s, sys 8.7s, output queue size 19
progress 35% @chr6:64000001, elapsed 0.4s, est remaining 0.7s, peak mem 102MB, user 0.7s, sys 10.1s, output queue size 3
progress 40% @chr7:57000001, elapsed 0.4s, est remaining 0.6s, peak mem 102MB, user 0.9s, sys 11.3s, output queue size 16
progress 45% @chr8:59000001, elapsed 0.5s, est remaining 0.6s, peak mem 102MB, user 1.0s, sys 12.6s, output queue size 4
progress 50% @chr9:78000001, elapsed 0.5s, est remaining 0.5s, peak mem 102MB, user 1.1s, sys 14.0s, output queue size 3
progress 55% @chr10:97000001, elapsed 0.5s, est remaining 0.4s, peak mem 102MB, user 1.1s, sys 15.3s, output queue size 14
progress 60% @chr11:125000001, elapsed 0.6s, est remaining 0.4s, peak mem 102MB, user 1.3s, sys 16.4s, output queue size 6
progress 65% @chr13:16000001, elapsed 0.6s, est remaining 0.3s, peak mem 102MB, user 1.4s, sys 17.6s, output queue size 8
progress 70% @chr14:69000001, elapsed 0.7s, est remaining 0.3s, peak mem 102MB, user 1.6s, sys 18.9s, output queue size 4
progress 75% @chr16:11000001, elapsed 0.7s, est remaining 0.2s, peak mem 102MB, user 1.7s, sys 20.1s, output queue size 7
progress 80% @chr18:4000001, elapsed 0.8s, est remaining 0.2s, peak mem 102MB, user 1.8s, sys 21.3s, output queue size 9
progress 85% @chr20:3000001, elapsed 0.8s, est remaining 0.1s, peak mem 102MB, user 1.8s, sys 22.4s, output queue size 19
progress 90% @chrX:34000001, elapsed 0.9s, est remaining 0.1s, peak mem 123MB, user 2.3s, sys 23.4s, output queue size 114
progress 95% @chrY:34000001, elapsed 0.9s, est remaining 0.0s, peak mem 136MB, user 2.6s, sys 24.5s, output queue size 276
progress 100% @chr21:41000001, elapsed 1.4s, est remaining 0.0s, peak mem 157MB, user 4.0s, sys 26.1s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 52290606
reads: 1001133
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.305 user 13.228 sys 15.379 real
done: 1 calls 0.001 user 0.000 sys 0.003 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.004 user 0.003 sys 1.434 real
idle: 78 calls 0.003 user 0.009 sys 44.273 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 165437440 mem 4.164 user 26.823 sys 2.597 real