File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/8cfa682708e673f9d7443397497ea8/.command.err
Size
86.1 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr4_22420786-22421189.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX4ThaIZ/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX4ThaIZ/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX4ThaIZ/chr4_22420786-22421189.bed.gz.tbi
[2026-06-04T19:43:31.767059Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:31.767773Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:31.767784Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:31.767789Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:31.767793Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX4ThaIZ'
[2026-06-04T19:43:31.767797Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:31.767802Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:31.767806Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:31.767809Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:43:31.767813Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:31.767817Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:31.767821Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:31.767825Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:31.767829Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:31.768512Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:31.768629Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:31.774542Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:31.775494Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:31.775690Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:31.775945Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:31.776282Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.776755Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.776847Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.776936Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.777063Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.777132Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.777253Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.777322Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.777757Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.777889Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.778152Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.778293Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.778361Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.778524Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.778746Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.778968Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.780536Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.780895Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:31.781153Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.781443Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.781573Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.781735Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.781849Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.781923Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.782041Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.782105Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.782223Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.782289Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.782402Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.782488Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.782813Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.783137Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.783251Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.783350Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.783484Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.783551Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.783664Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.783731Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.783843Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.783907Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.784020Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.784102Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.784368Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.784773Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.784882Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.784965Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.785082Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.785174Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.785348Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.785437Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.785542Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.785609Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.785717Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.785779Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.785990Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.786470Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.786583Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.786646Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.786752Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.786819Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.786930Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.786991Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.787100Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.787165Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.787272Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.787339Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.787452Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.787691Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.788218Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.788282Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.788397Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.788463Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.788570Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.788633Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.790128Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.790357Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.791110Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.791214Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.791397Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.791471Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.791586Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.791648Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.791762Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.791824Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.791985Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.792612Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.792728Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.792803Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.792933Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.793013Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.793135Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.793204Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.793315Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.793378Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.793635Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.793824Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.808847Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.809091Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.809668Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.810310Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.810700Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.810959Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.811368Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.811621Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.812162Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.812923Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.813384Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.813770Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.814801Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.815055Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.816948Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.817284Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.818067Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.820117Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:31.823080Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T19:43:31.828726Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T19:43:31.830183Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T19:43:31.830841Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T19:43:31.834473Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T19:43:31.838073Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T19:43:31.839379Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:31.839813Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T19:43:31.905141Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.906132Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.909464Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T19:43:32.471892Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.473017Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.476007Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T19:43:32.637621Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.638728Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.641408Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T19:43:32.746136Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T19:43:32.752985Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.754277Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.754643Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.757303Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T19:43:32.757693Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.760032Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T19:43:32.821647Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.821728Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.822696Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.823088Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.826062Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T19:43:32.827001Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T19:43:32.856302Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.857248Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.859478Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T19:43:32.921413Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.921506Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.922388Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.922692Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.925729Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T19:43:32.926931Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T19:43:32.987069Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.988424Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.988772Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.991422Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.992115Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T19:43:32.994173Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T19:43:33.456792Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.457898Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.460778Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T19:43:33.490187Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.491221Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.494287Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T19:43:33.555411Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.556439Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.559536Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T19:43:33.720870Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.721975Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.724974Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T19:43:33.886839Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.887920Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.890624Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T19:43:33.952053Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.952170Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.953198Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.954089Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.957197Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T19:43:33.958649Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T19:43:34.018536Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.018645Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.019627Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.019965Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.023334Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T19:43:34.024291Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T19:43:34.084487Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.085530Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.088458Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T19:43:34.651195Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.652184Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.655187Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T19:43:34.716585Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.717619Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.720503Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T19:43:34.882280Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.883225Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.886558Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T19:43:34.891426Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.892267Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.894991Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T19:43:34.908163Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.909037Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.911452Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T19:43:34.924839Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.925755Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.928448Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T19:43:34.941642Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.942455Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.945307Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T19:43:34.950221Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.951050Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.953543Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T19:43:34.966870Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.967707Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.970516Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T19:43:34.983574Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.984539Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.987192Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T19:43:35.299448Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.300312Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.303256Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T19:43:35.665803Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.666834Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.669575Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T19:43:35.670398Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.671056Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.673509Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T19:43:35.735288Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.735403Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.736270Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.736836Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.740003Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T19:43:35.740657Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T19:43:35.801546Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.801623Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.802369Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.802692Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.806195Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T19:43:35.807126Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T19:43:36.019517Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.019595Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.019623Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.020409Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.020961Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.021513Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.025209Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T19:43:36.027379Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T19:43:36.054140Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T19:43:36.054894Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.054984Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.055804Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.056118Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.059227Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T19:43:36.060236Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T19:43:36.088706Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.089503Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.092162Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T19:43:36.404505Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.404608Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.404635Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.405562Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.405926Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.406324Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.409421Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T19:43:36.410950Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T19:43:36.411818Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.412082Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T19:43:36.413242Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.415244Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T19:43:36.428972Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.429692Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.432141Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T19:43:36.461768Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.461850Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.461880Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.462586Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.462874Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.463398Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.465678Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T19:43:36.468230Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T19:43:36.469145Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.469775Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.472465Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T19:43:36.501626Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.502463Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.505249Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T19:43:36.566920Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.567670Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.570680Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T19:43:37.183533Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.184296Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.187110Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T19:43:37.298616Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.299395Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.302056Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T19:43:37.363700Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.363809Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.364550Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.364961Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.368408Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T19:43:37.369524Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T19:43:37.514275Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T19:43:37.530002Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.530112Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.530766Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.531162Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.534206Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T19:43:37.535200Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T19:43:37.563155Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.564101Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.564320Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.566756Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.568289Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T19:43:37.569485Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T19:43:37.631376Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.632106Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.634899Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T19:43:37.664234Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.665011Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.667983Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T19:43:37.829568Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.830340Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.833533Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T19:43:37.894598Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.895329Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.898301Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T19:43:38.110224Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.110955Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.113749Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T19:43:38.143703Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.144392Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.147148Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T19:43:38.176410Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.177115Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.179562Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T19:43:38.241192Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.241321Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.241928Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.242199Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.244986Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T19:43:38.245899Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T19:43:38.274508Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.274596Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.275299Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.275663Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.278760Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T19:43:38.279673Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T19:43:38.307902Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.307992Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.308589Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.308948Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.311659Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T19:43:38.339655Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T19:43:38.341516Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.341604Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.342191Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.342477Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.345314Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T19:43:38.346183Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T19:43:38.374975Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.375063Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.375628Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.375905Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.378481Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T19:43:38.379118Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T19:43:38.440820Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.440939Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.555256Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.555779Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.558515Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T19:43:38.620054Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.684439Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.685038Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.687537Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T19:43:38.717080Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.717687Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.720987Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T19:43:38.721590Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.753628Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.867984Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.868548Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.870885Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T19:43:38.932525Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.397827Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.398313Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.400871Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T19:43:39.430145Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.694696Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.695257Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.698485Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T19:43:39.727895Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.728196Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.728342Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.728602Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.729015Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.733390Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:39.734697Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:39.735815Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:39.761414Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.761475Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.761498Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.761693Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.761899Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.764316Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:39.765270Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:39.793790Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.793859Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.794034Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.796275Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:39.825859Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:42.395279Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:50.657675Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:50.657675Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] 
[2026-06-04T19:43:50.657675Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:50.657888Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] 
[2026-06-04T19:43:50.657912Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:50.657946Z] [nf-9c8cfa682708e673f9d7443397497ea8-950b9-n76f4] [590_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec