cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr14_64122012-64122133.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr14_64122012-64122133.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr14:100880712, elapsed 0.0s, est remaining 0.9s, peak mem 79MB, user 0.0s, sys 0.1s, output queue size 2040
progress 10% @chr15:40895938, elapsed 0.1s, est remaining 0.8s, peak mem 91MB, user 0.0s, sys 0.3s, output queue size 4282
progress 15% @chr15:63911908, elapsed 0.1s, est remaining 0.7s, peak mem 102MB, user 0.1s, sys 0.4s, output queue size 2608
progress 20% @chr15:87989891, elapsed 0.2s, est remaining 0.7s, peak mem 111MB, user 0.1s, sys 0.6s, output queue size 4892
progress 25% @chr16:1953956, elapsed 0.2s, est remaining 0.6s, peak mem 117MB, user 0.1s, sys 0.7s, output queue size 6581
progress 30% @chr16:23486710, elapsed 0.2s, est remaining 0.6s, peak mem 127MB, user 0.1s, sys 0.8s, output queue size 9058
progress 35% @chr16:66563122, elapsed 0.3s, est remaining 0.5s, peak mem 138MB, user 0.1s, sys 1.0s, output queue size 11664
progress 40% @chr16:89286670, elapsed 0.3s, est remaining 0.5s, peak mem 145MB, user 0.2s, sys 1.2s, output queue size 14137
progress 45% @chr17:9859942, elapsed 0.4s, est remaining 0.5s, peak mem 151MB, user 0.2s, sys 1.3s, output queue size 16747
progress 50% @chr17:36330448, elapsed 0.4s, est remaining 0.4s, peak mem 162MB, user 0.2s, sys 1.6s, output queue size 19349
progress 55% @chr17:45115094, elapsed 0.5s, est remaining 0.4s, peak mem 168MB, user 0.2s, sys 1.6s, output queue size 21591
progress 60% @chr17:68347125, elapsed 0.5s, est remaining 0.3s, peak mem 177MB, user 0.3s, sys 1.8s, output queue size 24121
progress 65% @chr18:5890198, elapsed 0.5s, est remaining 0.3s, peak mem 189MB, user 0.3s, sys 2.0s, output queue size 26841
progress 70% @chr18:62574057, elapsed 0.6s, est remaining 0.3s, peak mem 198MB, user 0.4s, sys 2.2s, output queue size 29219
progress 75% @chr19:6743708, elapsed 0.6s, est remaining 0.2s, peak mem 208MB, user 0.4s, sys 2.3s, output queue size 31608
progress 80% @chr19:15254152, elapsed 0.7s, est remaining 0.2s, peak mem 220MB, user 0.5s, sys 2.4s, output queue size 33866
progress 85% @chr19:36915796, elapsed 0.7s, est remaining 0.1s, peak mem 228MB, user 0.5s, sys 2.6s, output queue size 36177
progress 90% @chr19:46493558, elapsed 0.8s, est remaining 0.1s, peak mem 240MB, user 0.5s, sys 2.7s, output queue size 38352
progress 95% @chr20:36916678, elapsed 0.8s, est remaining 0.0s, peak mem 249MB, user 0.6s, sys 2.9s, output queue size 40988
progress 100% @chr20:63529536, elapsed 0.8s, est remaining 0.0s, peak mem 261MB, user 0.6s, sys 3.0s, output queue size 43427
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586806
output file size: 22310
reads: 1001133
contig: 48152 intervals 9000028 bases
active: 97912 calls 0.001 user 0.002 sys 0.019 real
advance: 49760 calls 0.006 user 0.008 sys 0.025 real
calc: 97912 calls 0.001 user 0.002 sys 0.019 real
done: 1 calls 0.001 user 0.000 sys 0.002 real
execute: 1 calls 0.001 user 0.010 sys 1.480 real
fetch: 97912 calls 0.008 user 0.010 sys 0.020 real
fetch_ref: 97912 calls 0.066 user 0.058 sys 0.358 real
idle: 39 calls 0.004 user 0.015 sys 20.072 real
init: 1 calls 0.019 user 0.021 sys 0.042 real
region: 97912 calls 0.000 user 0.002 sys 0.023 real
tracker: 97912 calls 0.037 user 0.009 sys 0.096 real
overall: 277053440 mem 1.147 user 5.650 sys 2.601 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory