cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --read_filter QualCalFilter,table=Sig_18_Blood.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table.post --algo ReadWriter Sig_18_Blood.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:153000001, elapsed 0.1s, est remaining 2.6s, peak mem 316MB, user 0.4s, sys 3.3s, output queue size 8
progress 10% @chr2:78000001, elapsed 0.3s, est remaining 2.3s, peak mem 556MB, user 0.8s, sys 6.5s, output queue size 41
progress 15% @chr2:235000001, elapsed 0.4s, est remaining 2.0s, peak mem 636MB, user 1.2s, sys 9.4s, output queue size 22
progress 20% @chr3:153000001, elapsed 0.5s, est remaining 1.9s, peak mem 775MB, user 1.5s, sys 12.7s, output queue size 5
progress 25% @chr4:118000001, elapsed 0.6s, est remaining 1.8s, peak mem 879MB, user 1.9s, sys 15.9s, output queue size 21
progress 30% @chr5:88000001, elapsed 0.7s, est remaining 1.6s, peak mem 942MB, user 2.2s, sys 19.0s, output queue size 19
progress 35% @chr6:64000001, elapsed 0.8s, est remaining 1.5s, peak mem 1008MB, user 2.5s, sys 22.2s, output queue size 15
progress 40% @chr7:55000001, elapsed 0.9s, est remaining 1.4s, peak mem 1074MB, user 2.9s, sys 25.3s, output queue size 2
progress 45% @chr8:60000001, elapsed 1.0s, est remaining 1.3s, peak mem 1158MB, user 3.2s, sys 28.6s, output queue size 11
progress 50% @chr9:76000001, elapsed 1.2s, est remaining 1.2s, peak mem 1255MB, user 3.5s, sys 31.8s, output queue size 21
progress 55% @chr10:96000001, elapsed 1.3s, est remaining 1.0s, peak mem 1330MB, user 3.8s, sys 35.0s, output queue size 8
progress 60% @chr11:129000001, elapsed 1.4s, est remaining 0.9s, peak mem 1387MB, user 4.2s, sys 38.3s, output queue size 5
progress 65% @chr13:23000001, elapsed 1.5s, est remaining 0.8s, peak mem 1437MB, user 4.6s, sys 41.4s, output queue size 17
progress 70% @chr14:62000001, elapsed 1.6s, est remaining 0.7s, peak mem 1494MB, user 5.0s, sys 44.7s, output queue size 1
progress 75% @chr15:98000001, elapsed 1.7s, est remaining 0.6s, peak mem 1509MB, user 5.3s, sys 48.0s, output queue size 17
progress 80% @chr18:4000001, elapsed 1.9s, est remaining 0.5s, peak mem 1536MB, user 5.6s, sys 51.3s, output queue size 17
progress 85% @chr20:19000001, elapsed 2.0s, est remaining 0.3s, peak mem 1587MB, user 5.9s, sys 54.6s, output queue size 19
progress 90% @chrX:42000001, elapsed 2.4s, est remaining 0.3s, peak mem 2796MB, user 10.0s, sys 56.4s, output queue size 114
progress 95% @chrY:42000001, elapsed 2.6s, est remaining 0.1s, peak mem 2815MB, user 12.9s, sys 57.4s, output queue size 276
progress 100% @chr21:41000001, elapsed 4.1s, est remaining 0.0s, peak mem 2829MB, user 27.1s, sys 58.6s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 52290606
output file size: 74586806
reads: 1001133
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.019 real
ReadQualCal::delayed_init: 1 calls 0.004 user 0.001 sys 0.021 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 2.160 user 6.973 sys 9.476 real
done: 1 calls 0.235 user 0.378 sys 0.614 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.003 user 0.000 sys 4.195 real
fetch: 3219322 calls 0.304 user 6.697 sys 7.620 real
fetch_reads: 3219322 calls 0.551 user 7.011 sys 7.748 real
fetch_ref: 13318 calls 0.039 user 0.031 sys 0.059 real
fetch_vcf: 13318 calls 1.506 user 0.059 sys 1.759 real
idle: 2108 calls 3.178 user 0.233 sys 65.603 real
init: 1 calls 0.010 user 0.001 sys 0.027 real
update: 13537 calls 9.308 user 1.415 sys 11.318 real
write: 3219322 calls 8.279 user 6.857 sys 15.557 real
overall: 2966884352 mem 34.899 user 59.471 sys 5.530 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_Blood.table --after Sig_18_Blood.table.post Sig_18_Blood.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.030 user 0.000 sys 0.027 real
done: 1 calls 0.040 user 0.020 sys 0.058 real
idle: 61 calls 0.002 user 0.000 sys 31.299 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 82087936 mem 0.071 user 0.035 sys 1.054 real