File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/291f887594de20a605104ac9552733/.command.err
Size
3.6 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --algo HsMetricAlgo --targets_list targets/foresight_clarity_targets_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed Sig_18_tissue_foresight_clarity_targets_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:163000001, elapsed 0.0s, est remaining 0.7s, peak mem 102MB, user 0.6s, sys 0.1s, output queue size 5
progress 10% @chr2:72000001, elapsed 0.1s, est remaining 0.6s, peak mem 102MB, user 1.2s, sys 0.4s, output queue size 16
progress 15% @chr2:235000001, elapsed 0.1s, est remaining 0.6s, peak mem 102MB, user 1.7s, sys 0.8s, output queue size 11
progress 20% @chr3:159000001, elapsed 0.1s, est remaining 0.5s, peak mem 102MB, user 2.4s, sys 1.2s, output queue size 19
progress 25% @chr4:111000001, elapsed 0.2s, est remaining 0.5s, peak mem 102MB, user 2.9s, sys 1.7s, output queue size 14
progress 30% @chr5:94000001, elapsed 0.2s, est remaining 0.5s, peak mem 102MB, user 3.6s, sys 2.0s, output queue size 13
progress 35% @chr6:58000001, elapsed 0.2s, est remaining 0.4s, peak mem 102MB, user 3.9s, sys 2.8s, output queue size 7
progress 40% @chr7:47000001, elapsed 0.3s, est remaining 0.4s, peak mem 102MB, user 4.2s, sys 3.5s, output queue size 16
progress 45% @chr8:60000001, elapsed 0.3s, est remaining 0.4s, peak mem 102MB, user 4.8s, sys 3.9s, output queue size 21
progress 50% @chr9:70000001, elapsed 0.3s, est remaining 0.3s, peak mem 102MB, user 5.6s, sys 4.2s, output queue size 5
progress 55% @chr10:99000001, elapsed 0.4s, est remaining 0.3s, peak mem 102MB, user 5.9s, sys 4.8s, output queue size 1
progress 60% @chr11:112000001, elapsed 0.4s, est remaining 0.3s, peak mem 102MB, user 6.3s, sys 5.5s, output queue size 11
progress 65% @chr13:16000001, elapsed 0.4s, est remaining 0.2s, peak mem 102MB, user 6.8s, sys 6.0s, output queue size 9
progress 70% @chr14:62000001, elapsed 0.5s, est remaining 0.2s, peak mem 102MB, user 7.3s, sys 6.5s, output queue size 21
progress 75% @chr16:16000001, elapsed 0.5s, est remaining 0.2s, peak mem 102MB, user 7.8s, sys 7.0s, output queue size 19
progress 80% @chr17:68000001, elapsed 0.5s, est remaining 0.1s, peak mem 102MB, user 8.3s, sys 7.4s, output queue size 22
progress 85% @chr20:21000001, elapsed 0.6s, est remaining 0.1s, peak mem 102MB, user 8.6s, sys 8.1s, output queue size 16
progress 90% @chrX:32000001, elapsed 0.6s, est remaining 0.1s, peak mem 132MB, user 9.2s, sys 8.7s, output queue size 114
progress 95% @chrY:33000001, elapsed 0.7s, est remaining 0.0s, peak mem 145MB, user 9.6s, sys 9.5s, output queue size 271
progress 100% @chr21:41000001, elapsed 1.0s, est remaining 0.0s, peak mem 157MB, user 10.7s, sys 10.5s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 50047053
reads: 1001838
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.297 user 5.335 sys 6.864 real
done: 1 calls 0.000 user 0.000 sys 0.001 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.002 user 0.001 sys 0.974 real
idle: 72 calls 0.013 user 0.013 sys 38.929 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 165449728 mem 11.141 user 10.860 sys 2.108 real