Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/fed0d88c872cb7436fbb52b2c66a39/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/f0f78c58c00045bc57d71e33fbf1a9/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/f0f78c58c00045bc57d71e33fbf1a9/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/fed0d88c872cb7436fbb52b2c66a39/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T19:43:17.560504Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:17.561109Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:17.561122Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:17.561127Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:17.561132Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXP4VXqS'
[2026-06-04T19:43:17.561135Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:17.561140Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:17.561144Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:17.561148Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:43:17.561151Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:17.561155Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:17.561159Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:17.561165Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:17.561169Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:17.561900Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:17.562038Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:17.567960Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:17.568681Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:17.568879Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:17.569109Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:17.569463Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.570284Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.570437Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.570870Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.571140Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.571403Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.572010Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.572683Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.572838Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.575029Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.575279Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:17.575647Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.576090Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.576269Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.576447Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.576527Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.576643Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.576710Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.576831Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.576904Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.577128Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.577204Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.577474Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.577833Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.577983Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.578060Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.578194Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.578263Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.578417Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.578501Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.578655Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.578738Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.579118Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.579487Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.579623Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.579696Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.579819Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.579893Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.580018Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.580099Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.580292Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.580383Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.580556Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.581002Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.581117Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.581194Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.581315Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.581479Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.581612Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.581681Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.581799Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.581875Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.582007Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.582218Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.582748Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.582821Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.582940Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.583010Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.583125Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.583191Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.583314Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.583383Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.583497Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.583561Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.583669Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.583866Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.584441Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.584515Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.584641Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.584710Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.584825Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.584898Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.585012Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.585078Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.606495Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.606902Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.607074Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.607360Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.608334Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.608512Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.608763Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.608899Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.608986Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.609145Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.609230Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.609289Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:17.609808Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.610350Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.611042Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.612333Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.613521Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.615614Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.617307Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.620119Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T19:43:17.622837Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T19:43:17.625437Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T19:43:17.629698Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T19:43:17.634078Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T19:43:17.636536Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T19:43:17.636998Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T19:43:17.639423Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T19:43:17.752661Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.753850Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.757729Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T19:43:17.868219Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.869136Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.872481Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T19:43:17.933716Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.934634Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.937893Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T19:43:18.550814Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.552359Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.555252Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T19:43:18.616626Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.617705Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.620920Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T19:43:18.732798Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.733743Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.737132Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T19:43:18.848528Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.849480Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.852645Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T19:43:18.881752Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.882629Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.885720Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T19:43:18.890699Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.891515Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.894409Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T19:43:18.923638Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.924546Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.927567Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T19:43:19.290015Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.291013Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.294557Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T19:43:19.355676Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.356666Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.360393Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T19:43:19.572342Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.573175Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.576472Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T19:43:19.637599Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.638111Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.639036Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.639301Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.642974Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T19:43:19.644057Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T19:43:19.704073Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.704955Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.707971Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T19:43:19.721086Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.721854Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.724740Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T19:43:19.737630Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.738831Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.739087Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.741470Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.743155Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T19:43:19.744087Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T19:43:19.757868Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.758950Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.761734Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T19:43:19.774824Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.775667Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.778805Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T19:43:19.791860Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.792648Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.795521Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T19:43:19.856735Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.856842Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.857665Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.858258Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.862416Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T19:43:19.862930Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T19:43:19.973615Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.974451Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.978408Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T19:43:20.039059Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.039903Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.043213Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T19:43:20.204937Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.205781Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.209884Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T19:43:20.822088Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.823046Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.826154Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T19:43:20.855620Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.857002Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.859771Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T19:43:20.860805Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.861639Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.864735Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T19:43:20.877487Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.878400Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.881620Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T19:43:20.894588Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.895418Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.898378Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T19:43:20.959584Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.960468Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.963476Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T19:43:21.576380Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.577286Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.580601Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T19:43:22.093313Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.094359Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.097871Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T19:43:22.158921Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.159904Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.163361Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T19:43:22.375038Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.375157Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.375909Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.376386Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.380439Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T19:43:22.384982Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.385804Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.388782Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T19:43:22.413546Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T19:43:22.418032Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.418303Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.419928Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.420294Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.420887Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.424446Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T19:43:22.424730Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.426894Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T19:43:22.429047Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T19:43:22.442211Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.442984Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.445570Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T19:43:22.475067Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.476513Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.476852Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.478096Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.481520Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T19:43:22.510606Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.511686Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.514752Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T19:43:22.575834Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.576589Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.579785Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T19:43:22.641119Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.642231Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.645514Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T19:43:22.674524Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.675337Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.678176Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.679575Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T19:43:22.680301Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.683227Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T19:43:22.744463Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.744556Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.745243Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.745656Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.748808Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T19:43:22.750360Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T19:43:22.809955Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.811102Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.814210Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T19:43:22.875494Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.876180Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.879790Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T19:43:23.241404Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.242158Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.245214Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T19:43:23.306403Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.307314Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.310703Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T19:43:23.371620Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.372352Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.375331Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T19:43:23.436561Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.437350Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.440576Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T19:43:23.501596Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.716243Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.716892Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.719896Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T19:43:23.781080Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.150292Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T19:43:24.196013Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.196100Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.196662Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.197038Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.199986Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T19:43:24.200980Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T19:43:24.229083Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.229287Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.343781Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.344374Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.347069Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T19:43:24.408409Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.723340Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.723826Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.726460Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T19:43:24.755793Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.170865Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.171356Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.174075Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T19:43:25.203786Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.368348Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.368835Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.371621Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T19:43:25.401065Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.401385Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.401546Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.401903Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.402099Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.405485Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:25.406757Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:25.407650Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:25.434416Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.434498Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.434524Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.434765Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.435061Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.438065Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:25.438492Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:25.467925Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.468003Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.468235Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.470945Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:25.500394Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.170641Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:36.449733Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:36.449733Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] 
[2026-06-04T19:43:36.449733Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:36.449799Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] 
[2026-06-04T19:43:36.449812Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:36.449819Z] [nf-36fed0d88c872cb7436fbb52b2c66a39-29592-jxw6x] [589_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec