Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/822d5e4c73bd18aa681431ef34811d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/805622031bd310c70caaff45a6c2f0/positive_somatic_control_1.snv_indel.whatshap.chr21.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/822d5e4c73bd18aa681431ef34811d/.command.run
==> STAGING COMPLETE (3 inputs)

Checking the headers and starting positions of 1 files
ls: positive_somatic_control_1.snv_indel.phased.vcf.gz.csi: No such file or directory