Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/aee0bb9d875a49de3095497b6d0ded/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr20_14085521-14085828.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr20_14085521-14085828.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/aee0bb9d875a49de3095497b6d0ded/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/d477fe8b5b7c55927132efa2aa1068/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/d477fe8b5b7c55927132efa2aa1068/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T19:43:32.992083Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:32.992697Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:32.992710Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:32.992715Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:32.992719Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX4aBtcW'
[2026-06-04T19:43:32.992723Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:32.992729Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:32.992732Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:32.992736Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:43:32.992740Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:32.992744Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:32.992747Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:32.992751Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:32.992755Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:32.993309Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:32.993411Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:32.999024Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:32.999716Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:32.999900Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:33.000090Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:33.000311Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.000796Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.000887Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.000979Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.001104Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.001174Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.001324Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.001398Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.001550Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.001704Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.002048Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.002280Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.002457Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.002606Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.002848Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.003650Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.004080Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.005860Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.006218Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:33.006402Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.006836Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.006910Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.007029Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.007096Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.007206Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.007268Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.007385Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.007450Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.007561Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.007626Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.007931Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.008294Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.008612Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.008676Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.008787Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.008884Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.009026Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.009094Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.009208Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.009278Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.009388Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.009452Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.009727Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.010147Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.010312Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.010390Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.010516Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.010583Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.010774Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.010845Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.010965Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.011033Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.011147Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.011216Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.011587Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.012069Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.012190Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.012258Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.012367Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.012430Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.012544Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.012607Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.012720Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.012786Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.012895Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.012984Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.013107Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.013360Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.014541Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.014611Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.014729Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.014792Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.014903Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.014971Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.016571Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.017183Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.017330Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.017404Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.017517Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.017581Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.017696Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.017757Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.017870Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.017934Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.018046Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.018118Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.018228Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.018374Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.019082Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.019149Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.019261Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.019327Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.019439Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.019501Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.019637Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.019701Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.019814Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.019874Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.035699Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.036161Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.036278Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.036382Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.037586Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.037692Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.037777Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.037968Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.038230Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.038631Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.038859Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.039528Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.040285Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.040720Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.041338Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.041874Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:33.042644Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.042956Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:33.044053Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.049843Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T19:43:33.050542Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-06-04T19:43:33.052594Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T19:43:33.055509Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T19:43:33.059802Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-06-04T19:43:33.061814Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T19:43:33.062836Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-06-04T19:43:33.064736Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-06-04T19:43:33.128620Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.128741Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.129781Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.130082Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.133888Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T19:43:33.135402Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T19:43:33.195221Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.195327Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.196363Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.196675Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.200013Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-06-04T19:43:33.200592Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-04T19:43:33.963159Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.964309Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.967280Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T19:43:34.129122Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.129229Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.130257Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.130725Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.134408Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-06-04T19:43:34.135000Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-06-04T19:43:34.147126Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.148007Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.150624Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T19:43:34.155700Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.156688Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.159323Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-06-04T19:43:34.271029Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.272508Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.275667Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T19:43:34.336829Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.338017Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.341483Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-04T19:43:34.906095Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.907210Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.909932Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T19:43:34.971657Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.972756Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.975494Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T19:43:35.004996Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.006116Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.009207Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T19:43:35.070332Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.071471Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.074874Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T19:43:35.186318Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.187446Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.190142Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-06-04T19:43:35.219651Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.220767Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.223526Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T19:43:35.252877Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.253975Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.256925Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-06-04T19:43:35.368480Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.369666Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.372671Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-06-04T19:43:35.785222Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.786140Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.788874Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T19:43:35.850475Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.851500Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.854234Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T19:43:35.883602Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.884652Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.887379Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T19:43:35.888246Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.888990Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.891940Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-06-04T19:43:35.921002Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.922273Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.922562Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.925064Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.926386Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-06-04T19:43:35.927274Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T19:43:35.957213Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.958174Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.960744Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-04T19:43:36.022718Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.023773Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.026415Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-06-04T19:43:36.087797Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.088749Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.091526Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T19:43:36.152963Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.153954Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.156896Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T19:43:36.185983Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.186067Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.186943Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.187243Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.190260Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T19:43:36.190680Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-06-04T19:43:36.252553Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.252635Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.253442Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.253937Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.256729Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-06-04T19:43:36.258212Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-06-04T19:43:36.318413Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.318511Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.319367Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.319635Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.322723Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T19:43:36.323911Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T19:43:36.384406Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.385316Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.388263Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T19:43:36.449550Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.450786Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.453827Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T19:43:36.514959Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.516317Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.518940Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T19:43:36.580595Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.582221Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.587098Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-06-04T19:43:36.746764Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.747944Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.750859Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-06-04T19:43:36.779993Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.781102Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.783919Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-06-04T19:43:36.845275Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.845393Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.846739Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.847169Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.850076Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-06-04T19:43:36.851288Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T19:43:36.911378Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.911481Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.912532Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.913042Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.916383Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T19:43:36.953482Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-06-04T19:43:36.977781Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.979003Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.982660Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T19:43:37.093706Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.094874Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.098058Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T19:43:37.111148Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.112524Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.115130Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-06-04T19:43:37.144529Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.145627Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.148706Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-06-04T19:43:37.153692Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.154721Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.157191Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-06-04T19:43:37.218776Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.219860Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.223388Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-04T19:43:37.484926Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.485755Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.488591Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T19:43:37.549994Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.550840Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.553542Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-06-04T19:43:37.615251Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.616079Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.618960Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-06-04T19:43:37.680506Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.681373Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.684478Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T19:43:37.746391Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.747187Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.750055Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T19:43:37.811673Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.812481Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.815034Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T19:43:37.876784Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.876871Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.876918Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.877617Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.877934Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.878115Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.882537Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-06-04T19:43:37.883739Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-04T19:43:37.884723Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-06-04T19:43:38.294906Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.295602Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.298218Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-04T19:43:38.359763Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.360536Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.363679Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T19:43:38.425093Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.425193Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.425869Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.426174Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.429282Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-04T19:43:38.430397Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T19:43:38.458370Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.459205Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.461068Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.461906Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.462256Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-06-04T19:43:38.464529Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T19:43:38.494276Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.494354Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.494987Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.495209Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.498452Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-06-04T19:43:38.499432Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T19:43:38.560073Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.560147Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.560773Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.561189Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.564182Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T19:43:38.565182Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-06-04T19:43:38.625819Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.625933Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.626562Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.626867Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.630061Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-06-04T19:43:38.631205Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T19:43:38.691417Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.691507Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.692076Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.692525Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.695432Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T19:43:38.696266Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-06-04T19:43:38.725285Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.725932Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.728443Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T19:43:38.757780Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.757859Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.758411Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.758629Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.761633Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T19:43:38.762462Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-06-04T19:43:38.790735Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.791479Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.793983Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-06-04T19:43:38.823381Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.824026Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.826783Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T19:43:38.856067Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.856680Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.859302Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-06-04T19:43:38.888618Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.888695Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.889251Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.889740Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.892783Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-06-04T19:43:38.893971Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-06-04T19:43:38.922011Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.954156Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.954725Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:38.957255Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-06-04T19:43:38.986973Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.019153Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.019703Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.022884Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-06-04T19:43:39.084014Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.248519Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.249128Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.253424Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-06-04T19:43:39.282855Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.648169Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.648840Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.651351Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-06-04T19:43:39.680688Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.496808Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.497369Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.499858Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-06-04T19:43:40.529373Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.894149Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.894656Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:40.896870Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-06-04T19:43:40.926469Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:46.492337Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:46.492906Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:46.495380Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-04T19:43:46.556953Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:46.557257Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:46.557392Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:46.557682Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:46.557967Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:46.562138Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:46.563540Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:46.564622Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:46.590363Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:46.590410Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:46.590659Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:46.591015Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:46.591700Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:46.593978Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:46.594741Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:46.624736Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:46.624798Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:46.624996Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:46.627104Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:46.656741Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:51.971531Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:44:06.125056Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:44:06.125056Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] 
[2026-06-04T19:44:06.125056Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:44:06.125748Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] 
[2026-06-04T19:44:06.125794Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:44:06.125851Z] [nf-c5aee0bb9d875a49de3095497b6d0ded-218bf-f5m52] [580_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec