File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/5c933895f2fdf8b2eb23679da47a3d/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-04T19:43:16.457517Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:16.469738Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:16.469770Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:16.469776Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:16.469780Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXSiIjxh'
[2026-06-04T19:43:16.469795Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:16.469800Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:16.469804Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:16.469807Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:43:16.469812Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:16.469816Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:16.469819Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:16.469826Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:16.469830Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:16.470391Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:16.470486Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:16.476235Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:16.477049Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:16.477216Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:16.477463Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:16.477733Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.478600Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.478692Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.478767Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.479027Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.479267Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.479561Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.479794Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.480192Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.482285Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.482579Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:16.482833Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.483019Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.483088Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.483202Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.483267Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.483377Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.483440Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.483551Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.483615Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.483803Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.483897Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.484402Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.484480Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.484594Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.484654Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.485091Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.485160Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.485273Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.485337Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.485759Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.485975Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.486367Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.486431Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.486579Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.486644Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.486756Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.486822Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.486936Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.487003Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.487116Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.487179Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.487294Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.487483Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.487846Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.488259Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.488731Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.488856Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.488994Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.489065Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.489177Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.489243Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.489353Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.489417Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.489530Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.489595Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.489728Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.489966Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.490658Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.490738Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.490867Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.490934Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.491052Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.491120Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.507291Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.507443Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.507548Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.507767Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.507871Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.507987Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.508083Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.508235Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.508327Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.508393Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:16.512194Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.512773Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.513055Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.514362Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.515209Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.515436Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T19:43:16.516299Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.517108Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.518015Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.520323Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.520891Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T19:43:16.524545Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T19:43:16.526859Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T19:43:16.530905Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T19:43:16.531519Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T19:43:16.532551Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T19:43:16.533675Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T19:43:16.636942Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.637021Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.638029Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.638477Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.642650Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T19:43:16.643384Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T19:43:17.004467Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.004597Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.005412Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.005760Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.009262Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T19:43:17.010334Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T19:43:17.070472Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.071385Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.074658Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T19:43:17.186561Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.187497Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.190509Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T19:43:17.252228Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.253139Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.256373Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T19:43:17.518095Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.518856Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.522104Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T19:43:17.583140Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.583245Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.584023Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.584397Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.587781Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T19:43:17.588714Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T19:43:17.648912Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.649056Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.649829Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.650188Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.653838Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T19:43:17.769480Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T19:43:17.815203Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.815330Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.816066Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.816381Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.819701Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T19:43:17.820432Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T19:43:17.880876Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.881799Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.884877Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T19:43:18.046335Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.047048Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.050003Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T19:43:18.312246Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.313031Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.316059Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T19:43:18.345525Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.346287Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.349395Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T19:43:18.378456Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.379221Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.382716Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T19:43:18.411701Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.412418Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.415369Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T19:43:18.444483Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.444637Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.445336Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.445598Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.448504Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T19:43:18.449887Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T19:43:18.477895Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.478638Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.481443Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T19:43:18.482650Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.483173Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.486197Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T19:43:18.597846Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.597950Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.598596Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.598942Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.602058Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T19:43:18.603348Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T19:43:18.663581Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.663686Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.664314Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.665115Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.668245Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T19:43:18.669416Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T19:43:18.697444Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.698129Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.700987Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T19:43:18.762395Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.762548Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.763322Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.763663Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.764164Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.766420Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T19:43:18.766622Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.769522Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T19:43:18.797655Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T19:43:18.798880Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.799896Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.800239Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.801209Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.804453Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T19:43:18.805487Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T19:43:18.833518Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.834296Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.836986Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T19:43:18.838008Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.838759Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.841935Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T19:43:18.871022Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.871826Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.874130Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.874869Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.875314Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T19:43:18.877640Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T19:43:18.906943Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.907590Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.910468Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T19:43:18.939746Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.940372Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.943002Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T19:43:18.972415Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.973047Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.975778Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T19:43:19.005129Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.005762Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.008580Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T19:43:19.009298Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.009698Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.012835Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T19:43:19.041689Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.041776Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.042278Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.042725Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.045632Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T19:43:19.046734Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T19:43:19.106834Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.106938Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.106970Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.107544Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.107850Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.108225Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.111222Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T19:43:19.112445Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T19:43:19.113578Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T19:43:19.141299Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.141862Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.144803Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T19:43:19.145666Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.177624Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.342109Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.342615Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.345478Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T19:43:19.406811Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.406925Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.407477Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.410277Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T19:43:19.439574Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.854921Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.855017Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.855465Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.855836Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.858632Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T19:43:19.859525Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T19:43:19.919969Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.920047Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.084533Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.085061Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.088004Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T19:43:20.149550Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.213855Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.214360Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.217110Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T19:43:20.246367Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.246656Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.246830Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.247387Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.247878Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.250422Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:20.252941Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:20.253789Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:20.281769Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.281834Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.281859Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.282087Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.282322Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.285324Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:20.286098Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:20.314995Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.315083Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.315321Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.317880Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:20.347313Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.115615Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:27.006114Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:27.006114Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] 
[2026-06-04T19:43:27.006114Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:27.006177Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] 
[2026-06-04T19:43:27.006184Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:27.006191Z] [nf-c75c933895f2fdf8b2eb23679da47a3d-96d4d-bdtwf] [603_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec