File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/29ef964275ec5bc051314e34755dd9/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-8wx0ued7 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 19:48:06,538 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 19:48:07,518 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 19:48:07,712 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 19:48:08,757 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 19:48:08,956 - cnv_pipe.batch.run_model - INFO - Processing cluster 975 with 199 probes
2026-06-04 19:48:09,398 - cnv_pipe.batch.run_model.cluster975 - INFO - Child process started for cluster 975 with 199 probes
2026-06-04 19:49:37,470 - cnv_pipe.batch.run_model.cluster975 - INFO - Child process finished cluster 975. Wrote cluster_975_samples.csv and cluster_975_params.csv
2026-06-04 19:49:37,473 - cnv_pipe.batch.run_model - INFO - Cluster 975 finished in 88.52 seconds. Status: SUCCESS