Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/5ad4acc0c1458b3b39eee598a68284/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/f0f78c58c00045bc57d71e33fbf1a9/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/f0f78c58c00045bc57d71e33fbf1a9/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr20_14085521-14085828.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr20_14085521-14085828.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/5ad4acc0c1458b3b39eee598a68284/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T19:43:18.872630Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:18.873203Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:18.873214Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:18.873219Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:18.873223Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX7NuyK4'
[2026-06-04T19:43:18.873227Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:18.873233Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:18.873237Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:18.873241Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:43:18.873244Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:18.873248Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:18.873253Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:18.873260Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:18.873264Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:18.873735Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:18.873923Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:18.880095Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:18.880920Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:18.881069Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:18.881497Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:18.881846Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.882320Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.882428Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.882500Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.882624Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.882693Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.882814Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.882880Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.883172Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.883529Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.883626Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.883913Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.884104Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.884615Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.885101Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.885400Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.887377Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.887649Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:18.888007Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.888089Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.888292Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.888379Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.888497Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.888567Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.888754Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.889018Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.889137Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.889205Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.889315Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.889380Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.889526Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.889595Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.889708Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.889792Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.889905Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.889973Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.890191Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.890504Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.890621Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.890685Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.890797Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.890856Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.890967Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.891036Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.891142Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.891208Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.891320Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.891382Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.891691Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.892225Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.892441Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.892520Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.892648Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.892713Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.892830Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.892899Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.893014Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.893083Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.893359Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.893824Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.893954Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.894020Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.894134Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.894204Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.894315Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.894383Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.894496Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.894558Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.895354Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.895874Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.895991Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.896055Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.896164Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.896227Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.898103Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.898260Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.898546Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.899116Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.899233Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.899298Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.899416Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.899478Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.899596Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.899657Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.899771Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.899868Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.900001Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.900076Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.900289Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.900961Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.901253Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.901852Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.902057Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.902701Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.902819Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.902882Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.903012Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.903076Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.918312Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.918931Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.919089Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.919276Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.920421Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.920552Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.920670Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.920857Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.921185Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.921442Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.921677Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.922458Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.922789Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.923484Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.923910Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.924222Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.924905Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:18.926993Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.928577Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.935203Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T19:43:18.937583Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T19:43:18.942902Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-06-04T19:43:18.944873Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T19:43:18.945336Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T19:43:18.949518Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-06-04T19:43:18.950591Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-06-04T19:43:18.996285Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-04T19:43:19.012576Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.012678Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.012719Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.013786Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.014085Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.014359Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.020801Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-06-04T19:43:19.021083Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T19:43:19.022331Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-06-04T19:43:19.481360Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.482468Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.485367Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T19:43:19.547116Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.548673Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.552187Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-06-04T19:43:19.964209Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.965466Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.969103Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T19:43:20.030228Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.032236Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.035609Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-06-04T19:43:20.197130Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.199483Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.203234Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T19:43:20.264300Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.265681Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.268967Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T19:43:20.380334Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.382547Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.385700Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T19:43:20.446897Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.448397Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.451637Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-06-04T19:43:20.480837Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.483091Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.486380Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-06-04T19:43:20.547895Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.549312Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.552663Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T19:43:20.613853Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.613943Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.614930Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.615273Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.619717Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T19:43:20.620551Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-06-04T19:43:20.681110Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.682609Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.686231Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-06-04T19:43:20.897936Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.899300Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.902849Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T19:43:20.964028Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.965662Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.969380Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-06-04T19:43:20.998066Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.998175Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.999704Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.000209Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.003924Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-06-04T19:43:21.005040Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T19:43:21.033356Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.035790Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.036279Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.039699Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.040356Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-04T19:43:21.042955Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-06-04T19:43:21.104315Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.105732Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.109631Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-06-04T19:43:21.170472Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.172514Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.176217Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T19:43:21.287627Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.288980Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.292615Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T19:43:21.353749Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.354917Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.357870Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-06-04T19:43:21.419307Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.420795Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.423682Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-06-04T19:43:21.685955Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.687000Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.690538Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T19:43:21.751607Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.751747Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.752999Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.753393Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.757139Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-06-04T19:43:21.758275Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T19:43:21.818201Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.819951Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.822953Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T19:43:21.884383Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.884536Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.885784Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.886411Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.889872Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T19:43:21.890743Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-06-04T19:43:21.951138Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.953136Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.954403Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.956214Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.959944Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-06-04T19:43:21.960868Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-04T19:43:22.020974Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.022483Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.025243Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-06-04T19:43:22.026390Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.027584Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.030776Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-06-04T19:43:22.060037Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.061692Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.064881Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T19:43:22.126052Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.127750Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.131476Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T19:43:22.192736Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.193756Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.196899Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-06-04T19:43:22.659451Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.660397Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.664305Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T19:43:22.724862Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.725869Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.729571Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T19:43:23.291656Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.292942Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.296275Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-06-04T19:43:23.357406Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.358868Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.362074Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-06-04T19:43:23.473323Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.474529Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.477536Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T19:43:23.538776Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.539627Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.542696Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T19:43:23.555608Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.556473Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.559515Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-06-04T19:43:23.588857Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.590010Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.590275Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.593029Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.593555Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-04T19:43:23.595972Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-06-04T19:43:23.657250Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.658308Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.661649Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-04T19:43:23.773117Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.774046Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.777127Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-06-04T19:43:23.838341Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.839215Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.842616Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-06-04T19:43:24.455550Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.456296Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.459150Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-06-04T19:43:24.571187Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.572407Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.572798Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.575210Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.575650Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T19:43:24.578388Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-04T19:43:24.607534Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.607961Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.608779Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.609166Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.614081Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T19:43:24.615035Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T19:43:24.677109Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.677200Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.677937Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.678229Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.681461Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T19:43:24.682302Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-06-04T19:43:24.711130Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.711883Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.714867Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T19:43:24.744113Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.744907Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.747424Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-06-04T19:43:24.776903Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.776993Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.777664Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.778142Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.781427Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T19:43:24.782180Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-06-04T19:43:24.810520Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.811229Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.814250Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-06-04T19:43:25.026028Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.026758Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.029507Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-06-04T19:43:25.058966Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.059680Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.062560Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-06-04T19:43:25.123968Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.124737Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.127850Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-04T19:43:25.140741Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.141413Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.144555Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T19:43:25.173645Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.174347Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.177308Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-06-04T19:43:25.206749Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.207585Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.210454Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T19:43:25.215326Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.216355Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.219082Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T19:43:25.248523Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.249199Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.251912Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T19:43:25.281233Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.281838Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.284500Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T19:43:25.345913Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.346667Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.349881Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T19:43:25.411125Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.411785Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.414736Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T19:43:25.443956Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.444622Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.447246Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-06-04T19:43:25.476926Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.477553Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.480349Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-06-04T19:43:25.792383Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.793044Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.795756Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T19:43:25.825368Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.826006Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.829056Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-06-04T19:43:25.858149Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.858742Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.861693Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-06-04T19:43:25.890948Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.891516Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.894213Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T19:43:25.923470Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.924076Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.926552Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T19:43:25.927913Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.928368Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.930759Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T19:43:25.960522Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.960602Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.075344Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.075898Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.078897Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-06-04T19:43:26.108003Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.422795Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.423322Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.426569Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T19:43:26.455290Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.669894Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.670372Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.673563Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-06-04T19:43:26.702554Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.766678Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.767195Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.769713Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-06-04T19:43:26.799102Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.963554Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.964073Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.966550Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-06-04T19:43:26.995945Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.261217Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.261698Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.264358Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-04T19:43:32.293825Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.294103Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.294234Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.294674Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.295052Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.298416Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:32.299856Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:32.300571Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:32.328454Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.328506Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.328527Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.328708Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.328938Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.331297Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:32.332066Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:32.361420Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.361474Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.361636Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.364189Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:32.393635Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:37.858838Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:51.960630Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:51.960630Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] 
[2026-06-04T19:43:51.960630Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:51.960720Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] 
[2026-06-04T19:43:51.960727Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:51.960733Z] [nf-495ad4acc0c1458b3b39eee598a68284-427d3-66xr9] [551_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec