File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/73897a75ed38d396c9ed41b7e92bd0/.command.err
Size
1.2 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-bosn87pm because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 19:45:00,846 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 19:45:01,640 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 19:45:01,804 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 19:45:02,791 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 19:45:02,859 - cnv_pipe.batch.run_model - INFO - Processing cluster 1 with 185 probes
2026-06-04 19:45:03,228 - cnv_pipe.batch.run_model.cluster1 - INFO - Child process started for cluster 1 with 185 probes
2026-06-04 19:46:01,957 - cnv_pipe.batch.run_model.cluster1 - INFO - Child process finished cluster 1. Wrote cluster_1_samples.csv and cluster_1_params.csv
2026-06-04 19:46:01,958 - cnv_pipe.batch.run_model - INFO - Cluster 1 finished in 59.10 seconds. Status: SUCCESS