cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.0s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 2700
progress 10% @chr2:19941759, elapsed 0.1s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 12741
progress 15% @chr2:189039272, elapsed 0.1s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 3360
progress 20% @chr3:97949844, elapsed 0.1s, est remaining 0.5s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 13846
progress 25% @chr4:88457270, elapsed 0.2s, est remaining 0.5s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 24093
progress 30% @chr5:146261510, elapsed 0.2s, est remaining 0.5s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 34131
progress 35% @chr6:127119291, elapsed 0.2s, est remaining 0.4s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 44086
progress 40% @chr7:128801186, elapsed 0.3s, est remaining 0.4s, peak mem 165MB, user 0.0s, sys 0.0s, output queue size 53568
progress 45% @chr9:841839, elapsed 0.3s, est remaining 0.4s, peak mem 285MB, user 0.0s, sys 0.0s, output queue size 7260
progress 50% @chr10:32451643, elapsed 0.3s, est remaining 0.3s, peak mem 294MB, user 0.0s, sys 0.0s, output queue size 17207
progress 55% @chr11:48245104, elapsed 0.4s, est remaining 0.3s, peak mem 303MB, user 0.0s, sys 0.0s, output queue size 27676
progress 60% @chr12:21872625, elapsed 0.4s, est remaining 0.3s, peak mem 303MB, user 0.0s, sys 0.0s, output queue size 37222
progress 65% @chr13:49203157, elapsed 0.4s, est remaining 0.2s, peak mem 303MB, user 0.0s, sys 0.0s, output queue size 48272
progress 70% @chr15:42717731, elapsed 0.5s, est remaining 0.2s, peak mem 303MB, user 0.0s, sys 0.0s, output queue size 58306
progress 75% @chr16:30953185, elapsed 0.5s, est remaining 0.2s, peak mem 303MB, user 0.0s, sys 0.0s, output queue size 67873
progress 80% @chr17:42543028, elapsed 0.5s, est remaining 0.1s, peak mem 303MB, user 0.0s, sys 0.0s, output queue size 78562
progress 85% @chr19:5667046, elapsed 0.6s, est remaining 0.1s, peak mem 303MB, user 0.0s, sys 0.0s, output queue size 88974
progress 90% @chr19:55731999, elapsed 0.6s, est remaining 0.1s, peak mem 303MB, user 0.0s, sys 0.1s, output queue size 98472
progress 95% @chr22:37018138, elapsed 1.0s, est remaining 0.1s, peak mem 2524MB, user 7.3s, sys 1.9s, output queue size 3251
progress 100% @chr21:41501693, elapsed 1.0s, est remaining 0.0s, peak mem 2524MB, user 7.6s, sys 1.9s, output queue size 12805
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 52290606
reads: 1001133
contig: 201779 intervals 37922265 bases
advance: 208647 calls 2.004 user 0.070 sys 2.361 real
done: 1 calls 0.296 user 0.049 sys 0.347 real
execute: 1 calls 0.010 user 0.000 sys 1.040 real
fetch_reads: 208647 calls 0.090 user 0.000 sys 0.175 real
fetch_ref: 2072 calls 0.016 user 0.009 sys 0.021 real
fetch_vcf: 2072 calls 1.106 user 0.019 sys 1.041 real
idle: 92 calls 0.004 user 0.002 sys 31.733 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2257 calls 5.221 user 1.773 sys 7.621 real
overall: 2647355392 mem 11.378 user 13.525 sys 2.402 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory