File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/442fe4af8a6f22b301a61d2224b524/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-kj752lqe because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 19:47:51,001 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 19:47:52,065 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 19:47:52,275 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 19:47:53,605 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 19:47:53,694 - cnv_pipe.batch.run_model - INFO - Processing cluster 882 with 195 probes
2026-06-04 19:47:54,309 - cnv_pipe.batch.run_model.cluster882 - INFO - Child process started for cluster 882 with 195 probes
2026-06-04 19:49:46,522 - cnv_pipe.batch.run_model.cluster882 - INFO - Child process finished cluster 882. Wrote cluster_882_samples.csv and cluster_882_params.csv
2026-06-04 19:49:46,524 - cnv_pipe.batch.run_model - INFO - Cluster 882 finished in 112.83 seconds. Status: SUCCESS