Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/5d75c6bd94ebaae153141b6316d76a/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/2a8dbcb349f5fe11a03765f00f5900/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/5d75c6bd94ebaae153141b6316d76a/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/2a8dbcb349f5fe11a03765f00f5900/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T19:43:13.860287Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:13.868213Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:13.868236Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:13.868241Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:13.868247Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXALzJIx'
[2026-06-04T19:43:13.868251Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:13.868257Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:13.868261Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:13.868264Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:43:13.868268Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:13.868272Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:13.868276Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:13.868280Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:13.868285Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:13.868875Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:13.868985Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:13.874843Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:13.875521Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:13.875696Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:13.875887Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:13.876173Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.877073Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.877165Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.877250Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.877702Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.877854Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:13.877955Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.878632Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.879017Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.879211Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.880413Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.880790Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:13.881230Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.881419Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.881541Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.881607Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.881718Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.881781Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.881893Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.881957Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.882149Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.882214Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.882332Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.882400Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.882707Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.882964Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.883085Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.883151Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.883258Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.883322Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.883434Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.883510Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.883623Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.883685Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.883790Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.883853Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.883962Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.884183Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.884602Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.884697Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.884816Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.884877Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.884987Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.885055Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.885168Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.885241Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.885365Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.885428Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.885602Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.885668Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.885861Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.885990Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.886591Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.886656Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.886782Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.886863Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.902240Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.902981Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.903105Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.903287Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.903363Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.903451Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.903517Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.903626Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.903710Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:13.903874Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:13.907790Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:13.908422Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:13.908690Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:13.909224Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:13.909795Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:13.910532Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:13.911172Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:13.913319Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:13.914472Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:13.916993Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T19:43:13.920603Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T19:43:13.924011Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T19:43:13.926224Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T19:43:13.928890Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T19:43:13.930297Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T19:43:13.931917Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T19:43:13.932969Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T19:43:14.030733Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:14.030843Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:14.030893Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:14.032008Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:14.032695Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:14.033384Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:14.036751Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T19:43:14.038680Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T19:43:14.039597Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T19:43:14.799403Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:14.799486Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:14.800281Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:14.800546Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:14.803611Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T19:43:14.804477Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T19:43:14.864808Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:14.865583Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:14.867935Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T19:43:14.979444Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:14.980169Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:14.982829Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T19:43:15.044112Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.044884Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.047569Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T19:43:15.208946Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.209693Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.212402Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T19:43:15.373680Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.374505Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.377065Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T19:43:15.438487Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.439191Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.442102Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T19:43:15.503109Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.503790Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.506161Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T19:43:15.535508Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.536171Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.538787Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T19:43:15.950774Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.951516Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.953970Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T19:43:15.983284Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.983936Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:15.986461Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T19:43:16.047765Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.048497Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.050843Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T19:43:16.112447Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.113067Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.115412Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T19:43:16.144843Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.145408Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.148041Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T19:43:16.560197Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.560901Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.563695Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T19:43:16.592890Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.593431Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.595920Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T19:43:16.625562Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.626229Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.628968Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T19:43:16.658280Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.658946Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.659361Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.661214Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.661633Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T19:43:16.664071Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T19:43:16.693103Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.693668Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.696115Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T19:43:16.807651Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.808269Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.810658Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T19:43:16.840077Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.840613Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.843208Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T19:43:16.904758Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.905491Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.908092Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T19:43:16.913139Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.913771Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.916232Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T19:43:16.945731Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.945822Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.946425Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.946730Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.949377Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T19:43:16.977138Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T19:43:16.979137Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.979206Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.979688Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.980131Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.982606Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T19:43:16.983210Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T19:43:17.012753Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.013267Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.015689Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T19:43:17.028893Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.029294Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.031725Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T19:43:17.143451Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.144114Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.146474Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T19:43:17.208147Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.208221Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.208779Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.209197Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.211853Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T19:43:17.212525Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T19:43:17.241249Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.241319Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.241826Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.242211Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.244618Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T19:43:17.245657Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T19:43:17.274036Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.274866Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.277525Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T19:43:17.278509Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.279068Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.281222Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T19:43:17.310995Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.311084Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.826122Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.826777Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.829570Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T19:43:17.858753Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.858829Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.859245Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.861565Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T19:43:17.891112Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.955138Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.955713Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.958330Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T19:43:17.987609Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.802969Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.803492Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.805843Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T19:43:18.835270Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.299960Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.300369Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.302839Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T19:43:19.332170Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.947355Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.947773Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.949964Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T19:43:19.979657Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.979952Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.980108Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.980491Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.980953Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.984480Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:19.986322Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:20.011693Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:20.012939Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.012995Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.013019Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.013233Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.013534Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.016039Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:20.041032Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:20.045858Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.045910Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.046110Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.048307Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:20.077868Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.450112Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:32.756490Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:32.756490Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] 
[2026-06-04T19:43:32.756490Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:32.756558Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] 
[2026-06-04T19:43:32.756565Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:32.756573Z] [nf-df2a8dbcb349f5fe11a03765f00f5900-7ab1b-x6vzd] [633_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec