File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/42763b2b2fff1f94b0b88e8c271b00/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-k02_xhim because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 19:48:17,836 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 19:48:20,053 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 19:48:20,570 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 19:48:23,274 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 19:48:23,618 - cnv_pipe.batch.run_model - INFO - Processing cluster 970 with 171 probes
2026-06-04 19:48:24,647 - cnv_pipe.batch.run_model.cluster970 - INFO - Child process started for cluster 970 with 171 probes
2026-06-04 19:49:46,510 - cnv_pipe.batch.run_model.cluster970 - INFO - Child process finished cluster 970. Wrote cluster_970_samples.csv and cluster_970_params.csv
2026-06-04 19:49:46,512 - cnv_pipe.batch.run_model - INFO - Cluster 970 finished in 82.89 seconds. Status: SUCCESS