Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/5d75c6bd94ebaae153141b6316d76a/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/a8f1c37590a75474e25d9423c1faba/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/5d75c6bd94ebaae153141b6316d76a/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/a8f1c37590a75474e25d9423c1faba/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T19:43:17.545615Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:17.558001Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:17.558042Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:17.558057Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:17.558069Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXy4gbiU'
[2026-06-04T19:43:17.558079Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:17.558090Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:17.558098Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:17.558109Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:43:17.558117Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:17.558122Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:17.558133Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:17.558146Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:17.558153Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:17.558904Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:17.559002Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:17.564676Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:17.565208Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:17.565406Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:17.565628Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:17.565858Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.566124Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.566211Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.566281Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.566449Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.566516Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.566635Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.566698Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.566819Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.566880Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.567076Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.567400Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.567486Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.567716Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.568106Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.568685Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.569070Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.570812Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.571029Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:17.571084Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.571290Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.571363Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.571747Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.572023Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.572307Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.572371Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.572489Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.572555Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.572667Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.572734Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.572845Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.572936Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.573054Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.573116Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.573232Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.573351Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.573524Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.573886Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.573997Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.574058Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.574171Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.574235Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.574348Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.574410Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.575019Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.575371Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.575486Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.575553Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.575760Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.575827Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.575935Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.576002Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.576130Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.576194Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.576307Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.576370Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.576835Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.577188Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.577298Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.577363Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.577473Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.577534Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.577644Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.577706Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.577813Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.577881Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.577989Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.578050Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.592703Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.593222Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.593297Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.593467Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.593536Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.593622Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.593691Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.595182Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.595739Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:17.595792Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:17.598487Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.599072Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.599290Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.599727Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.600374Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.600930Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.601927Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.602673Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.603675Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.608144Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T19:43:17.608816Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T19:43:17.611801Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T19:43:17.613689Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T19:43:17.616773Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T19:43:17.617704Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T19:43:17.620152Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T19:43:17.621250Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T19:43:17.720008Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.720798Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.724167Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T19:43:17.785561Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.786367Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.788890Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T19:43:18.351445Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.352233Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.354803Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T19:43:18.355809Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.356618Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.359041Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T19:43:18.420540Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.421452Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.424488Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T19:43:18.686396Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.687467Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.690518Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T19:43:19.403342Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.404606Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.408265Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T19:43:19.870247Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.871184Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.873913Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T19:43:19.903124Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.903949Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.907253Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T19:43:19.968425Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.969390Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.972171Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T19:43:20.001590Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.002537Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.005533Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T19:43:20.117058Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.118012Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.120280Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.121131Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.121341Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T19:43:20.123931Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T19:43:20.153341Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.153439Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.154246Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.154550Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.157366Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T19:43:20.158384Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T19:43:20.218774Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.218864Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.219835Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.220213Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.223747Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T19:43:20.224807Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T19:43:20.535492Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.535599Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.536335Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.536802Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.540117Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T19:43:20.541086Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T19:43:20.601478Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.601598Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.602393Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.602930Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.606094Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T19:43:20.607088Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T19:43:20.667315Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.668695Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.672719Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T19:43:20.884327Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.885575Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.888409Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T19:43:20.949802Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.950826Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.954375Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T19:43:21.015211Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.016227Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.019614Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T19:43:21.481376Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.482457Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.486265Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T19:43:21.747394Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.748257Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.751372Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T19:43:21.812576Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.813578Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.816938Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T19:43:21.877998Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.878857Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.882166Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T19:43:22.544599Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.545656Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.549116Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T19:43:22.562308Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.563134Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.565606Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T19:43:22.595041Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.595981Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.599017Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T19:43:22.600075Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.600153Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.601033Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.601318Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.604762Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T19:43:22.605787Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T19:43:22.634100Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.634963Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.638247Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T19:43:22.651160Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.651968Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.654782Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T19:43:22.716051Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.716931Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.719962Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T19:43:22.748926Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.749851Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.752433Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T19:43:22.813931Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.814917Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.817754Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T19:43:22.879135Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.880134Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.883275Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T19:43:22.912555Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.913377Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.916575Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T19:43:23.128264Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.129231Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.132129Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T19:43:23.193563Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.193669Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.194530Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.194847Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.198385Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T19:43:23.199582Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T19:43:23.259712Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.260544Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.264591Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T19:43:23.325416Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.326352Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.330182Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T19:43:23.491302Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.491988Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.495209Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T19:43:23.556246Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.557034Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.560531Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T19:43:23.621184Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.621880Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.624909Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T19:43:23.637940Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.638625Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.641458Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T19:43:23.670530Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.671175Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.674044Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T19:43:23.687098Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.687726Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.690666Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T19:43:23.719948Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.752037Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.752628Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.755672Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T19:43:23.816789Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.382022Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.382717Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.385718Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T19:43:24.446971Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.447058Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.447088Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.447639Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.447958Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.451128Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T19:43:24.452281Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T19:43:24.480751Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.484370Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.199638Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.200124Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.203016Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T19:43:25.232156Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.747394Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.748001Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.751081Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T19:43:25.780270Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.795990Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.796434Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.798745Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T19:43:25.860277Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.860613Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.860825Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.861239Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.861762Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.866063Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:25.867841Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:25.891861Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:25.893886Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.893943Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.893970Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.894216Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.894447Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.897269Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:25.922724Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:25.927093Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.927170Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.927446Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.930264Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:25.991520Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.159026Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:36.446701Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:36.446701Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] 
[2026-06-04T19:43:36.446701Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:36.446778Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] 
[2026-06-04T19:43:36.446785Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:36.446792Z] [nf-dfa8f1c37590a75474e25d9423c1faba-88449-znzjx] [672_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec