File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/25e39b187256f944849d0430c61c21/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXLZqVR1/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXLZqVR1/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXLZqVR1/chr19_15162349-15162662.bed.gz.tbi
[2026-06-04T19:43:16.559214Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:16.580063Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:16.580091Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:16.580100Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:16.580108Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXLZqVR1'
[2026-06-04T19:43:16.580116Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:16.580124Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:16.580132Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:16.580139Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] [RunParameters] memMb: 386571
[2026-06-04T19:43:16.580146Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:16.580154Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:16.580162Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:16.580169Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:16.580177Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:16.580721Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:16.580850Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:16.591344Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:16.592395Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:16.592591Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:16.592861Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:16.593137Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.593775Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.594028Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.594413Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.594512Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.594829Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.595183Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.595635Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.595942Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.596392Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.596814Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.599048Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.599242Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.599495Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:16.599680Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.600061Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.600276Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.600402Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.600610Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.600731Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.601046Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.601550Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.601783Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.601912Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.602119Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.602237Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.602449Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.602569Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.602884Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.603852Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.604110Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.604247Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.604460Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.604583Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.604793Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.604911Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.605197Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.605877Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.606177Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.606894Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.607697Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.607896Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.608720Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.608901Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.611312Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.611457Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.611766Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.611897Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.612113Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.612239Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.612459Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.612745Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.613761Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.614157Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.614411Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.614536Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.614783Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.614927Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.616042Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.616182Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.616394Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.616512Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.616721Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.616842Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.617049Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.617220Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.641195Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.642091Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.642266Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.643597Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.644805Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.645033Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.645176Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.647235Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.648426Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.648542Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:16.665231Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.666219Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.666471Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.666840Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.667287Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.667866Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.668382Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.668906Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.669717Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.673873Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T19:43:16.676366Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T19:43:16.680359Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T19:43:16.681714Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T19:43:16.686152Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T19:43:16.686675Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T19:43:16.687881Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T19:43:16.688880Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T19:43:16.836954Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.837070Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.838180Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.838528Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.842863Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T19:43:16.843747Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T19:43:18.005199Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.006297Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.009763Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T19:43:18.120901Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.122060Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.125755Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T19:43:18.186683Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.187839Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.190786Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T19:43:18.252066Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.253182Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.256757Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T19:43:19.120221Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.121347Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.124972Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T19:43:19.236359Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.237514Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.240880Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T19:43:19.253504Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.254627Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.257915Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T19:43:19.318927Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.320030Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.322964Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T19:43:19.384193Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.385242Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.388715Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T19:43:19.499657Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.500765Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.504401Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T19:43:19.765513Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.766596Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.769841Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T19:43:19.798783Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.799910Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.802946Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T19:43:19.831759Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.832885Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.836138Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T19:43:19.864811Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.865859Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.869055Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T19:43:19.882012Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.883084Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.886242Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T19:43:20.097865Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.098895Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.102253Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T19:43:20.163292Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.164338Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.167795Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T19:43:21.181310Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.182440Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.186021Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T19:43:21.198738Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.199832Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.203301Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T19:43:21.232517Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.233591Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.237094Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T19:43:21.241894Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.242980Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.246449Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T19:43:21.307359Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.308386Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.311835Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T19:43:21.623437Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.624493Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.628038Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T19:43:21.688696Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.690332Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.694221Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T19:43:22.656856Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.658355Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.661888Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T19:43:22.722762Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.724258Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.727895Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T19:43:23.139613Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.141382Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.144762Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T19:43:23.205747Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.207287Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.210684Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T19:43:23.572355Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.573823Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.577706Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T19:43:23.638422Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.640392Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.644126Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T19:43:24.306478Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.307999Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.311751Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T19:43:24.372721Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.374186Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.377511Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T19:43:24.538888Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.540286Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.543273Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T19:43:24.604372Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.606134Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.606764Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.608311Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.612103Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T19:43:24.724212Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.725595Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.729292Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T19:43:24.840228Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.840387Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.841605Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.842102Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.846029Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T19:43:24.886922Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T19:43:24.906831Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.906957Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.908273Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.908791Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.912414Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T19:43:24.913965Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T19:43:24.974355Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.976198Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.980439Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T19:43:25.041282Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.041420Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.042603Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.043084Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.047182Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T19:43:25.048342Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T19:43:25.107951Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.108099Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.109275Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.109792Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.114034Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T19:43:25.115005Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T19:43:25.174752Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.175990Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.179806Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T19:43:25.741701Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.742555Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.746653Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T19:43:25.857595Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.858352Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.861972Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T19:43:25.922786Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.924005Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.928303Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T19:43:25.989582Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.204793Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.205543Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.208685Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T19:43:26.269819Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.085842Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.086536Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.089742Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T19:43:27.150681Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.565685Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.565792Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.566401Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.566690Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.570036Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T19:43:27.571238Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T19:43:27.631128Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.631235Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.949179Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.949851Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.952771Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T19:43:29.013836Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.345561Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T19:43:31.385251Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.385344Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.385961Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.388630Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T19:43:31.450071Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.450466Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.450652Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.450977Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.451318Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.454880Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:31.456469Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:31.457436Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:31.516788Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.516884Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.516924Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.517212Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.517503Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.520875Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:31.522211Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:31.581726Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.581851Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.582137Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.585040Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:31.646387Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.571712Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:49.699369Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:49.699369Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] 
[2026-06-04T19:43:49.699369Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:49.699450Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] 
[2026-06-04T19:43:49.699461Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:49.699471Z] [nf-4725e39b187256f944849d0430c61c21-63d1c-zsxfl] [738_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec