File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/7830f10122ad2ea40a86fdc9063b88/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr1_68991-70108.bed)
Attempt

Content

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[2026-06-04T19:43:21.345329Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:21.349241Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:21.349280Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:21.349286Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:21.349291Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXXr5htL'
[2026-06-04T19:43:21.349295Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:21.349301Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:21.349304Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:21.349308Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:43:21.349312Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:21.349315Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:21.349319Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:21.349322Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:21.349326Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:21.349798Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:21.349907Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:21.355891Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:21.356761Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:21.356947Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:21.357173Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:21.357444Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.357757Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.357890Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.357972Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.358094Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.358162Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.358289Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.358353Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.358474Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.358597Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.359068Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.359125Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.359337Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.359688Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.359967Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.360713Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.360893Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.361100Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.361270Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.363693Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.364047Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:21.364443Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.364577Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.364649Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.364762Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.364826Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.364943Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.365007Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.365117Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.365186Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.365294Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.365391Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.365980Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.366161Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.366278Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.366344Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.366456Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.366521Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.366633Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.366695Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.366814Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.366877Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.366988Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.367057Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.367944Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.368512Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.368665Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.368734Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.368931Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.369000Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.369107Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.369172Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.369288Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.369350Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.369465Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.369534Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.369821Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.370017Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.370582Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.371013Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.371128Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.371191Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.371308Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.371372Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.371481Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.371552Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.371661Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.371722Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.389250Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.389403Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.389479Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.389664Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.389736Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.389863Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.391665Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.392327Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.392411Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.392468Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:21.398104Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.398751Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.398986Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.399420Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.400031Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.400746Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.401657Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.402557Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.403804Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.407429Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T19:43:21.411686Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T19:43:21.412762Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T19:43:21.415763Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T19:43:21.417479Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T19:43:21.419919Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T19:43:21.421081Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T19:43:21.423692Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T19:43:21.519629Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.519794Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.521273Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.521784Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.525836Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T19:43:21.527082Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T19:43:22.288958Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.290230Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.293629Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T19:43:22.806040Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.807140Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.810518Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T19:43:23.423199Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.424435Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.427468Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T19:43:23.990250Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.991193Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.994072Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T19:43:24.105771Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.106639Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.109430Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T19:43:24.271563Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.271666Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.272518Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.272851Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.275504Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T19:43:24.276301Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T19:43:24.305762Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.306674Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.309290Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T19:43:24.314406Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.315205Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.317763Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T19:43:24.347298Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.348191Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.351080Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T19:43:24.380339Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.381174Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.383719Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T19:43:24.413311Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.413401Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.414139Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.414498Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.417664Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T19:43:24.418732Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T19:43:24.479205Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.479309Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.480068Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.480380Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.483267Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T19:43:24.484283Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T19:43:24.546589Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.546705Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.547442Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.547821Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.550832Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T19:43:24.551717Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T19:43:24.580177Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.580902Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.583658Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T19:43:24.584597Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.585156Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.587592Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T19:43:24.617111Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.617864Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.620529Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T19:43:24.782372Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.783144Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.785724Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T19:43:25.047868Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.048630Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.051662Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T19:43:25.313469Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.314470Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.317301Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T19:43:25.528786Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.528909Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.529719Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.530213Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.533202Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T19:43:25.534283Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T19:43:25.594567Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.595470Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.598277Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T19:43:25.659530Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.660386Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.663241Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T19:43:25.724818Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.725687Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.728506Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T19:43:25.990261Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.990987Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.994091Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T19:43:26.256101Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.256824Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.259633Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T19:43:26.264583Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.265154Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.267661Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T19:43:26.297328Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.297972Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.300615Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T19:43:26.462366Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.462989Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.466132Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T19:43:26.527228Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.527946Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.530317Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T19:43:26.559790Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.560451Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.563453Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T19:43:26.624776Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.625435Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.627945Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T19:43:26.657418Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.658073Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.660477Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T19:43:26.673909Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.674467Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.676692Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T19:43:26.691137Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.691684Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.694221Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T19:43:26.707498Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.708074Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.710405Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T19:43:26.723821Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.724353Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.726580Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T19:43:26.740038Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.740580Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.742923Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T19:43:26.772410Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.772494Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.772524Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.773003Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.773343Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.773871Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.776784Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T19:43:26.777353Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T19:43:26.778777Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.779383Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T19:43:26.779482Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.782063Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T19:43:26.811271Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.811338Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.811361Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.811793Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.812026Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.812239Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.814920Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T19:43:26.816112Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T19:43:26.817139Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T19:43:26.845608Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.845686Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.846102Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.848508Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T19:43:26.877954Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.878024Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.878438Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.880944Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T19:43:26.910225Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.174724Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.175166Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.177854Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T19:43:27.207096Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.271174Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.271561Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.274232Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T19:43:27.303314Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.718063Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.718448Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.720958Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T19:43:27.750372Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.914546Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.914948Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.917196Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T19:43:27.978890Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.979288Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.981519Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T19:43:28.043182Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.207477Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.207949Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.210282Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T19:43:28.239893Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.240118Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.240223Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.240514Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.240842Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.244421Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:28.245468Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:28.268558Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:28.273518Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.273571Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.273593Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.273775Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.274153Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.276342Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:28.277155Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:28.306154Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.306211Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.306375Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.308645Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:28.338157Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.959717Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:40.237551Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:40.237551Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] 
[2026-06-04T19:43:40.237551Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:40.237635Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] 
[2026-06-04T19:43:40.237643Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:40.237649Z] [nf-b17830f10122ad2ea40a86fdc9063b88-04bca-hqfc7] [584_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec