File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/119a9b8803ac5f4cdafd10fb11e00a/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

View in new tab 
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXbgc2zp/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXbgc2zp/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXbgc2zp/chr19_15162349-15162662.bed.gz.tbi
[2026-06-04T19:43:21.919168Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:21.919796Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:21.919818Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:21.919829Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:21.919834Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXbgc2zp'
[2026-06-04T19:43:21.919839Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:21.919845Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:21.919848Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:21.919853Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:43:21.919857Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:21.919862Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:21.919866Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:21.919871Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:21.919875Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:21.920303Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:21.920403Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:21.926183Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:21.926824Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:21.927197Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:21.927447Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:21.927728Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.928104Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.928206Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.928282Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.928428Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.928525Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.928686Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.928762Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.929262Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.929373Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.929589Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.930430Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.930770Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.931046Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.931225Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.933541Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.933719Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:21.933968Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.934283Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.934597Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.934831Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.934902Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.935017Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.935086Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.935197Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.935262Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.935378Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.935442Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.935554Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.935627Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.936002Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.936397Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.936518Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.936582Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.936691Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.936754Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.936862Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.936926Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.937035Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.937095Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.937208Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.937269Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.937378Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.937446Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.938578Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.938922Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.939045Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.939166Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.939284Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.939348Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.939459Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.939525Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.939636Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.939702Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.939816Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.939879Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.940062Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.940618Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.940777Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.940953Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.941486Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.941657Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.942213Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.942835Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.943020Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.943110Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.959151Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.959287Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.959388Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.959594Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.959680Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.959791Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.959882Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.960017Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.961907Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:21.962200Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:21.978888Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.979754Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.980019Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.980431Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.980850Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.981285Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.981807Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.982660Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.983172Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.989877Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T19:43:21.993020Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T19:43:21.995505Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T19:43:21.997689Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T19:43:22.001313Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T19:43:22.001674Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T19:43:22.002213Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T19:43:22.099582Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.100756Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.104567Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T19:43:23.017105Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.018151Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.020912Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T19:43:23.082097Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.083030Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.086326Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T19:43:23.197789Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.198815Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.202029Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T19:43:23.263254Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.264116Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.267305Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T19:43:23.628971Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.630133Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.633123Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T19:43:23.694424Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.695509Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.699058Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T19:43:24.010392Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.011542Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.014814Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T19:43:24.043734Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.044824Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.047893Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T19:43:24.076925Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.078005Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.080939Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T19:43:24.091646Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T19:43:24.094021Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.094108Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.095140Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.095414Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.098284Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T19:43:24.099180Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T19:43:24.127486Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.127594Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.128537Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.128854Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.132443Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T19:43:24.133347Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T19:43:24.161398Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.162526Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.165354Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T19:43:24.226684Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.227799Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.230714Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T19:43:24.842765Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.843695Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.846318Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T19:43:25.007733Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.007812Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.008638Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.009093Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.012558Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T19:43:25.013074Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T19:43:25.042140Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.042891Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.045910Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T19:43:25.207195Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.207993Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.210596Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T19:43:25.239850Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.240579Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.243369Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T19:43:25.272333Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.273075Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.275762Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T19:43:25.304866Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.305573Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.308379Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T19:43:25.419549Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.420326Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.423036Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T19:43:25.484342Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.485059Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.487864Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T19:43:25.749377Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.750140Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.753517Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T19:43:25.782247Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.782983Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.786122Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T19:43:25.847021Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.847720Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.850668Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T19:43:25.851338Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.851916Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.854424Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T19:43:25.883695Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.883761Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.884372Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.884794Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.887519Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T19:43:25.888618Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T19:43:25.916792Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.917450Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.919935Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T19:43:25.949197Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.949834Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.952422Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T19:43:25.981630Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.981704Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.982303Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.982567Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.985492Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T19:43:25.986257Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T19:43:25.998663Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.999276Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.001754Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T19:43:26.014958Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.015013Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.015575Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.015820Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.018801Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T19:43:26.019803Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T19:43:26.031683Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.032275Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.035206Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T19:43:26.064401Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.065155Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.068177Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T19:43:26.129527Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.130285Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.133120Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T19:43:26.194454Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.195338Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.198661Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T19:43:26.227616Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.228456Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.231205Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T19:43:26.260387Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.261190Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.264573Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T19:43:26.293559Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.294315Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.297336Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T19:43:26.358505Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.359218Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.362228Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T19:43:26.573544Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.574113Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.576790Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T19:43:26.637970Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.638570Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.641463Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T19:43:26.702533Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.703138Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.706133Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T19:43:26.767401Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.031651Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.032174Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.034947Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T19:43:27.064178Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.328433Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.328918Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.331336Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T19:43:27.392722Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.392785Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.393271Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.395986Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T19:43:27.425064Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.488978Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.489471Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.491815Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T19:43:27.521184Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.185886Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.186356Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.189007Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T19:43:28.218184Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.331999Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.332390Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.334774Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T19:43:28.364136Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.628142Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.628516Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.630753Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T19:43:28.660122Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.660369Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.660477Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.660688Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.661145Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.662886Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:28.664926Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:28.665323Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:28.693707Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.693747Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.693768Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.693943Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.694357Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.696482Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:28.697368Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:28.726902Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.726942Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.727092Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.729300Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:28.758864Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.530707Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:40.808316Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:40.808316Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] 
[2026-06-04T19:43:40.808316Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:40.808392Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] 
[2026-06-04T19:43:40.808401Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:40.808409Z] [nf-28119a9b8803ac5f4cdafd10fb11e00a-25dfb-wxc5k] [673_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec