cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_2.tnseq.vcf.gz --contamination negative_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_2.tnseq.segments --orientation_priors negative_somatic_control_2.tnseq.orientation_data.tsv negative_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:95000001, elapsed 0.1s, est remaining 1.2s, peak mem 415MB, user 0.1s, sys 2.4s, output queue size 101
progress 10% @chr2:82000001, elapsed 0.1s, est remaining 0.9s, peak mem 415MB, user 0.4s, sys 10.6s, output queue size 262
progress 15% @chr3:7000001, elapsed 0.1s, est remaining 0.8s, peak mem 415MB, user 0.9s, sys 17.8s, output queue size 424
progress 20% @chr3:190000001, elapsed 0.2s, est remaining 0.7s, peak mem 415MB, user 1.2s, sys 24.2s, output queue size 586
progress 25% @chr4:140000001, elapsed 0.2s, est remaining 0.7s, peak mem 415MB, user 1.7s, sys 30.0s, output queue size 683
progress 30% @chr5:110000001, elapsed 0.3s, est remaining 0.6s, peak mem 415MB, user 2.3s, sys 35.2s, output queue size 618
progress 35% @chr6:147000001, elapsed 0.3s, est remaining 0.6s, peak mem 415MB, user 2.6s, sys 40.4s, output queue size 438
progress 40% @chr7:126000001, elapsed 0.3s, est remaining 0.5s, peak mem 415MB, user 3.0s, sys 45.9s, output queue size 600
progress 45% @chr8:124000001, elapsed 0.4s, est remaining 0.5s, peak mem 415MB, user 3.4s, sys 50.5s, output queue size 762
progress 50% @chr9:129000001, elapsed 0.4s, est remaining 0.4s, peak mem 415MB, user 3.8s, sys 55.5s, output queue size 923
progress 55% @chr11:66000001, elapsed 0.5s, est remaining 0.4s, peak mem 415MB, user 4.3s, sys 60.0s, output queue size 854
progress 60% @chr11:34000001, elapsed 0.5s, est remaining 0.3s, peak mem 415MB, user 4.6s, sys 64.6s, output queue size 1017
progress 65% @chr13:89000001, elapsed 0.5s, est remaining 0.3s, peak mem 415MB, user 5.0s, sys 68.8s, output queue size 789
progress 70% @chr13:36000001, elapsed 0.6s, est remaining 0.2s, peak mem 415MB, user 5.3s, sys 73.3s, output queue size 951
progress 75% @chr18:5000001, elapsed 0.6s, est remaining 0.2s, peak mem 415MB, user 5.5s, sys 74.7s, output queue size 1113
progress 80% @chr20:41000001, elapsed 0.6s, est remaining 0.2s, peak mem 415MB, user 5.7s, sys 75.4s, output queue size 1275
progress 85% @chrX:8000001, elapsed 0.7s, est remaining 0.1s, peak mem 415MB, user 5.9s, sys 76.0s, output queue size 1437
progress 90% @chrY:43000001, elapsed 0.7s, est remaining 0.1s, peak mem 415MB, user 6.0s, sys 76.4s, output queue size 1599
progress 95% @chr16:15000001, elapsed 0.8s, est remaining 0.0s, peak mem 417MB, user 6.2s, sys 77.6s, output queue size 2066
progress 100% @HLA-DRB1*12:17:1, elapsed 1.0s, est remaining 0.0s, peak mem 417MB, user 6.6s, sys 82.3s, output queue size 1745
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000a06d1
features: 1f8bfbff fffab20b
extended: f1bf27eb 1b407f7e
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 51111
output file size: 43431
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.002 user 0.001 sys 0.016 real
"predict_filter": 171 calls 0.006 user 0.004 sys 0.087 real
advance: 3219322 calls 0.590 user 32.864 sys 47.487 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.001 user 0.001 sys 1.027 real
fetch_ref: 460 calls 0.004 user 0.043 sys 0.320 real
idle: 20057 calls 0.883 user 0.617 sys 364.507 real
init: 1 calls 0.233 user 0.211 sys 0.727 real
overall: 437538816 mem 8.599 user 86.431 sys 3.094 real