File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/2d2220d27d935e9373c453915cc2bd/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-w4vu542y because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 19:48:46,407 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 19:48:47,590 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 19:48:47,813 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 19:48:49,167 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 19:48:49,490 - cnv_pipe.batch.run_model - INFO - Processing cluster 1189 with 195 probes
2026-06-04 19:48:49,999 - cnv_pipe.batch.run_model.cluster1189 - INFO - Child process started for cluster 1189 with 195 probes
2026-06-04 19:50:04,776 - cnv_pipe.batch.run_model.cluster1189 - INFO - Child process finished cluster 1189. Wrote cluster_1189_samples.csv and cluster_1189_params.csv
2026-06-04 19:50:04,778 - cnv_pipe.batch.run_model - INFO - Cluster 1189 finished in 75.29 seconds. Status: SUCCESS