File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/5b2e20e16de1aa116fd8df55f64049/.command.log
Size
1.6 KB
Task
DAQ:SAMTOOLS_MERGE (HCC1395_tumor)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/766a9ef5164d5978fe1ef397d58ac2/HCC1395_tumor.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/1aabdf6399312c91d1b31d4368aed0/HCC1395_tumor.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/5b2e20e16de1aa116fd8df55f64049/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/b4e1f6fde4fca37d273de4cd63f230/HCC1395_tumor.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/a8bb8ebe973fb832a314877285837d/HCC1395_tumor.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/3695781370bf0c115aad65f2b8c83a/HCC1395_tumor.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/5b2e20e16de1aa116fd8df55f64049/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/2f2ccf9e00c3c764bf40d8007a33b9/HCC1395_tumor.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/9f2bb1b01d196cb425a214f9620b62/HCC1395_tumor.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/3ee47e298f5b686edc8d8df4aecd24/HCC1395_tumor.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory