Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/6ea0218ccfbda56b8c70a0c3028cc1/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/6ea0218ccfbda56b8c70a0c3028cc1/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/d477fe8b5b7c55927132efa2aa1068/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/d477fe8b5b7c55927132efa2aa1068/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T19:43:26.605978Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:26.621508Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:26.621547Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:26.621553Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:26.621560Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX8boQDI'
[2026-06-04T19:43:26.621566Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:26.621575Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:26.621581Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:26.621588Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:43:26.621593Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:26.621599Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:26.621607Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:26.621612Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:26.621618Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:26.622219Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:26.622372Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:26.628343Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:26.629023Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:26.629186Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:26.629414Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:26.629841Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.630800Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.631057Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.631543Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.631817Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.632101Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.632319Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.632994Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.633360Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.633746Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.635632Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.636001Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:26.636203Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.636511Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.636666Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.636745Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.636881Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.636957Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.637094Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.637171Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.637380Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.637463Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.637855Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.638357Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.638596Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.638687Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.639393Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.639979Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.640423Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.640558Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.640825Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.641465Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.641662Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.641765Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.641938Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.642034Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.642206Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.642301Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.642479Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.642608Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.642998Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.643630Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.643922Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.644050Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.644233Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.644332Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.644599Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.645336Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.645545Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.645643Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.645814Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.645913Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.646089Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.646189Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.646424Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.646603Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.647628Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.647769Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.647938Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.648036Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.648193Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.648275Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.648650Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.649529Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.672964Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.673640Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.673805Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.674178Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.675370Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.675592Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.675686Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.676201Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.676350Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.677020Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.677134Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.679546Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.680031Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.680715Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:26.681098Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.681519Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:26.682214Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.682792Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.684190Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.689099Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T19:43:26.691376Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T19:43:26.694496Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T19:43:26.697368Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T19:43:26.702688Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T19:43:26.705169Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T19:43:26.708294Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T19:43:26.708892Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T19:43:26.814372Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.814449Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.814481Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.815375Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.815724Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.816314Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.820867Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T19:43:26.823237Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T19:43:26.824521Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T19:43:26.880749Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.881599Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.884808Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T19:43:26.945784Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.946781Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.949781Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T19:43:27.010753Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.011783Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.014821Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T19:43:27.075685Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.076706Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.080088Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T19:43:27.391325Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.392432Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.395435Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T19:43:27.456596Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.457548Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.460472Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T19:43:27.621750Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.622676Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.625622Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T19:43:27.686763Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.687733Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.690972Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T19:43:27.751893Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.752725Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.755661Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T19:43:27.768377Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.769140Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.772259Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T19:43:27.801130Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.801854Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.804876Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T19:43:27.916036Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.916878Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.919980Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T19:43:27.948888Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.949671Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.952764Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T19:43:28.063756Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.063826Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.064554Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.064794Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.067910Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T19:43:28.069485Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T19:43:28.128733Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.128806Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.129498Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.129802Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.132684Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T19:43:28.133863Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T19:43:28.193842Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.193901Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.194602Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.194917Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.198898Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T19:43:28.199579Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T19:43:28.459876Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.460678Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.463828Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T19:43:28.524845Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.525590Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.528615Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T19:43:28.589713Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.589802Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.590506Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.590889Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.594256Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T19:43:28.595198Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T19:43:28.655371Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.655443Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.656113Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.656541Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.659661Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T19:43:28.660541Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T19:43:28.688746Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.689374Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.691931Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T19:43:28.753287Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.753959Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.757822Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T19:43:28.786376Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.787010Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.790248Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T19:43:28.851088Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.851711Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.854734Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T19:43:28.915707Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.916369Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.919462Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T19:43:29.180989Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.181696Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.184479Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T19:43:29.245604Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.246347Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.249480Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T19:43:29.310498Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.311135Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.314439Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T19:43:29.375198Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.375814Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.378661Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T19:43:29.379293Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.379836Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.382741Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T19:43:29.411501Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.412058Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.414707Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T19:43:29.415636Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.415830Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.416523Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.416879Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.420976Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T19:43:29.422107Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T19:43:29.449509Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.450068Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.452643Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T19:43:29.453518Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.454038Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.456518Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T19:43:29.485696Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.486219Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.489237Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T19:43:29.494059Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.494561Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.497572Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T19:43:29.526499Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.526994Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.529759Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T19:43:29.590755Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.591280Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.594172Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T19:43:29.655092Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.655621Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.658375Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T19:43:29.719417Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.783316Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.783804Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.787237Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T19:43:29.847822Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.961797Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.962283Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.965598Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T19:43:30.026351Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.026407Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.026875Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.029498Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T19:43:30.090679Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.305107Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.305732Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.308698Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T19:43:30.337593Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.338190Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.341331Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T19:43:30.346044Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.377851Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.692053Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.692564Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.695372Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T19:43:30.696200Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.696594Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.699045Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T19:43:30.760327Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.767921Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.768112Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.768222Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.768548Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.769041Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.773096Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:30.773424Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:30.773893Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:30.801531Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.801754Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.804159Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:30.805239Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.805273Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.805455Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.807780Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:30.837267Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.838557Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.838702Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.840784Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:30.870481Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.337187Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:37.159346Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:37.159346Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] 
[2026-06-04T19:43:37.159346Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:37.159412Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] 
[2026-06-04T19:43:37.159422Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:37.159429Z] [nf-aa6ea0218ccfbda56b8c70a0c3028cc1-f00d5-gps4k] [737_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec