File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/620f1cc7e3973080605ef56ede0f35/.command.err
Size
61.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

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[2026-06-04T19:43:16.756290Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:16.756794Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:16.756806Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:16.756811Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:16.756815Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXre9Tai'
[2026-06-04T19:43:16.756819Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:16.756825Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:16.756829Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:16.756832Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:43:16.756836Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:16.756840Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:16.756844Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:16.756848Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:16.756852Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:16.757342Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:16.757465Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:16.763504Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:16.764286Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:16.764752Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:16.764965Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:16.765187Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.765585Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.765678Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.765751Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.765867Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.765936Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.766055Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.766121Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.766423Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.766704Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.766773Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.767305Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.767855Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.769495Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.769825Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.769893Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:16.770271Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.770600Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.770729Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.770794Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.770986Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.771057Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.771173Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.771242Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.771397Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.771471Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.771607Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.771869Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.772235Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.772303Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.772413Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.772478Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.772615Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.772683Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.772800Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.772863Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.772987Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.773094Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.773215Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.773485Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.773891Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.773953Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.774064Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.774131Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.774764Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.774833Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.775213Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.775755Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.776060Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.776441Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.776555Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.776626Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.776736Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.776799Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.776910Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.776989Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.777107Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.777172Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.777277Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.777340Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.777450Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.777511Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.777619Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.777779Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.778044Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.778674Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.795028Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.795501Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.795575Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.795751Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.795825Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.795914Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.795978Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.796090Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.796165Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.797858Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:16.801790Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.802455Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.802932Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.803576Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.805710Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.806037Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T19:43:16.806579Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.807443Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.808241Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.809047Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.812598Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T19:43:16.815684Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T19:43:16.819901Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T19:43:16.821994Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T19:43:16.823429Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T19:43:16.824603Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T19:43:16.825679Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T19:43:16.926823Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.926925Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.927725Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.928415Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.932035Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T19:43:16.932832Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T19:43:17.695085Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.695957Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.698870Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T19:43:17.760197Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.761139Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.764126Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T19:43:18.126436Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.127185Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.130008Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T19:43:18.159187Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.159277Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.160080Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.160586Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.163637Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T19:43:18.164587Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T19:43:18.224886Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.224989Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.225771Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.226074Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.229338Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T19:43:18.230393Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T19:43:18.392467Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.393325Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.395962Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T19:43:18.557832Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.558624Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.561630Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T19:43:18.823632Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.823718Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.824528Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.824789Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.827636Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T19:43:18.829041Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T19:43:18.856801Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.857760Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.860439Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T19:43:18.873527Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.874315Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.876721Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T19:43:18.906338Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.906456Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.907189Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.907437Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.910895Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T19:43:18.911953Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T19:43:19.473050Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.473898Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.477197Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T19:43:19.688948Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.689691Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.692750Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T19:43:19.721916Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.722708Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.725636Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T19:43:19.787259Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.788055Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.790760Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T19:43:19.820130Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.820884Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.823856Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T19:43:19.837029Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.837733Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.840084Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T19:43:19.869610Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.870351Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.873063Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T19:43:19.886158Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.886796Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.889430Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T19:43:19.918822Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.919524Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.922338Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T19:43:20.033969Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.034838Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.037607Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T19:43:20.149124Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.149837Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.152867Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T19:43:20.182021Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.182716Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.185758Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T19:43:20.247030Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.247785Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.250834Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T19:43:20.311889Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.312603Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.315466Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T19:43:20.627435Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.628106Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.630998Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T19:43:20.992936Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.993608Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.996473Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T19:43:21.057975Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.058674Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.061718Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T19:43:21.090807Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.091554Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.094709Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T19:43:21.256138Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.256824Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.259683Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T19:43:21.320968Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.321694Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.324786Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T19:43:21.385811Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.385910Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.386569Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.386892Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.389933Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T19:43:21.390355Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T19:43:21.419190Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.419782Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.422770Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T19:43:21.435530Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.436032Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.438963Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T19:43:21.468531Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.469148Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.471875Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T19:43:21.533211Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.533788Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.536319Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T19:43:21.597873Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.598468Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.601223Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T19:43:21.662549Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.663165Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.665648Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T19:43:21.696212Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.696296Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.696748Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.697096Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.700507Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T19:43:21.701491Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T19:43:21.762989Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.763080Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.763528Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.763822Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.766549Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T19:43:21.767634Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T19:43:21.796462Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.797188Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.799006Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.799505Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.799694Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T19:43:21.802124Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T19:43:21.831630Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.831720Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.831747Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.832206Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.834986Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T19:43:21.864109Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.279236Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.279830Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.282477Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T19:43:22.311797Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.426031Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.426521Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.428987Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T19:43:22.458438Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.572834Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.573350Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.575845Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T19:43:22.589083Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.589476Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.592104Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T19:43:22.605321Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.621217Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.688023Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.688419Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.690913Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T19:43:23.720223Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.720426Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.720522Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.720966Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.721306Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.724585Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:23.725818Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:23.726279Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:23.753809Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.753870Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.753893Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.754072Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.754272Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.756857Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:23.757616Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:23.786349Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.786421Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.786592Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.788714Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:23.818337Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.339873Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:35.645119Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:35.645119Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] 
[2026-06-04T19:43:35.645119Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:35.645196Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] 
[2026-06-04T19:43:35.645203Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:35.645211Z] [nf-f4620f1cc7e3973080605ef56ede0f35-c4693-rhp7w] [594_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec