cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_tissue --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_2.tnseq.vcf.gz --contamination positive_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_2.tnseq.segments --orientation_priors positive_somatic_control_2.tnseq.orientation_data.tsv positive_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:190000001, elapsed 0.1s, est remaining 1.0s, peak mem 220MB, user 0.2s, sys 2.0s, output queue size 71
progress 10% @chr1:223000001, elapsed 0.1s, est remaining 0.8s, peak mem 220MB, user 0.3s, sys 4.9s, output queue size 232
progress 15% @chr3:30000001, elapsed 0.1s, est remaining 0.7s, peak mem 220MB, user 0.5s, sys 7.9s, output queue size 394
progress 20% @chr3:192000001, elapsed 0.2s, est remaining 0.7s, peak mem 220MB, user 0.9s, sys 10.9s, output queue size 556
progress 25% @chr4:93000001, elapsed 0.2s, est remaining 0.6s, peak mem 220MB, user 1.2s, sys 13.6s, output queue size 717
progress 30% @chr5:126000001, elapsed 0.2s, est remaining 0.6s, peak mem 220MB, user 1.4s, sys 16.0s, output queue size 338
progress 35% @chr6:92000001, elapsed 0.3s, est remaining 0.5s, peak mem 220MB, user 1.7s, sys 18.7s, output queue size 499
progress 40% @chr7:80000001, elapsed 0.3s, est remaining 0.5s, peak mem 220MB, user 2.0s, sys 21.5s, output queue size 660
progress 45% @chr8:100000001, elapsed 0.4s, est remaining 0.4s, peak mem 220MB, user 2.3s, sys 24.3s, output queue size 822
progress 50% @chr9:56000001, elapsed 0.4s, est remaining 0.4s, peak mem 220MB, user 2.6s, sys 27.2s, output queue size 984
progress 55% @chr10:126000001, elapsed 0.4s, est remaining 0.4s, peak mem 220MB, user 2.9s, sys 30.0s, output queue size 1145
progress 60% @chr12:17000001, elapsed 0.5s, est remaining 0.3s, peak mem 220MB, user 3.3s, sys 32.8s, output queue size 1307
progress 65% @chr13:43000001, elapsed 0.5s, est remaining 0.3s, peak mem 220MB, user 3.6s, sys 35.6s, output queue size 1469
progress 70% @chr14:62000001, elapsed 0.6s, est remaining 0.2s, peak mem 220MB, user 3.9s, sys 38.6s, output queue size 1631
progress 75% @chr16:5000001, elapsed 0.6s, est remaining 0.2s, peak mem 220MB, user 4.1s, sys 41.2s, output queue size 1792
progress 80% @chr15:97000001, elapsed 0.6s, est remaining 0.2s, peak mem 220MB, user 4.4s, sys 43.7s, output queue size 1954
progress 85% @chr20:56000001, elapsed 0.7s, est remaining 0.1s, peak mem 220MB, user 4.7s, sys 46.2s, output queue size 2116
progress 90% @chrX:37000001, elapsed 0.7s, est remaining 0.1s, peak mem 220MB, user 5.1s, sys 49.2s, output queue size 2278
progress 95% @chrY:8000001, elapsed 0.8s, est remaining 0.0s, peak mem 220MB, user 5.4s, sys 52.0s, output queue size 2516
progress 100% @HLA-DRB1*13:02:01:1, elapsed 0.9s, est remaining 0.0s, peak mem 220MB, user 5.7s, sys 60.9s, output queue size 5864
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 00050657
features: bfebfbff 7ffefbff
extended: d39ff7eb 00000818
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) Platinum 8259CL CPU @ 2.50GHz
threads: 96 max 96
algo: TNfilter
license: sentieon:TNhaplotyper=96
input file size: 53230
output file size: 44181
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 561 calls 0.002 user 0.002 sys 0.020 real
"predict_filter": 187 calls 0.040 user 0.007 sys 0.052 real
advance: 3219322 calls 0.523 user 22.691 sys 26.341 real
done: 1 calls 0.002 user 0.000 sys 0.003 real
execute: 1 calls 0.005 user 0.002 sys 1.022 real
fetch_ref: 476 calls 0.001 user 0.030 sys 0.018 real
idle: 19769 calls 0.497 user 0.488 sys 132.155 real
init: 1 calls 0.233 user 0.039 sys 0.352 real
overall: 232411136 mem 7.168 user 63.561 sys 2.378 real